RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 SGPP1Q9BX95 441 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 OR11A1Q9GZK7 315 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 MBNL1Q9NR56 388 aaKnown RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 SDHAF3Q9NRP4 125 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 ARRDC5A6NEK1 342 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 RFPL4AA6NLU0 287 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 RFPL4AL1F8VTS6 287 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 OR2T1O43869 369 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 EPPINO95925 133 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 IFNA5P01569 189 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 PNMTP11086 282 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 PRPH2P23942 346 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 CHATP28329 748 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 PTGFRP43088 359 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 OR1D4P47884 311 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 RAB4BP61018 213 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 RPS18P62269 152 aaKnown RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 SRSF5Q13243 272 aaKnown RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 PPP1R1AQ13522 171 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 MST1LQ2TV78 715 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 CYB5R2Q6BCY4 276 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 OR11G2Q8NGC1 345 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 OR5D14Q8NGL3 314 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 GOT1L1Q8NHS2 421 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 THRSPQ92748 146 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 WDR76Q9H967 626 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 EXOSC3Q9NQT5 275 aaKnown RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 ALKBH4Q9NXW9 302 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 GHRLQ9UBU3 117 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 GAB2Q9UQC2 676 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 AMDHD2Q9Y303 409 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 PCDHGA1Q9Y5H4 931 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 ADAMTS9Q9P2N4 1935 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 CACNA1EQ15878 2313 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 C17orf105B2RV13 164 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 FGF17O60258 216 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 GLCEO94923 617 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 S100A8P05109 93 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 PTAFRP25105 342 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 OPRM1P35372 400 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 PXNP49023 591 aaPredicted RBP4.9□□□□□ -1.62
LIMA1-203ENST00000547825 ARHGAP19Q14CB8 494 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 SP6Q3SY56 376 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 TMEM196Q5HYL7 178 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 PRAMEF8Q5VWM4 474 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 PRAMEF7Q5VXH5 474 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 ZNF626Q68DY1 528 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 SLC22A25Q6T423 547 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 TMEM182Q6ZP80 229 aaPredicted RBP4.9□□□□□ -1.62
LIMA1-203ENST00000547825 MDGA2Q7Z553 956 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 MISPQ8IVT2 679 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 GALNT16Q8N428 558 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 MORN4Q8NDC4 146 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 OR1N1Q8NGS0 311 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 OR2G2Q8NGZ5 317 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 SDSLQ96GA7 329 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 SERINC2Q96SA4 455 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 RBM24Q9BX46 236 aaKnown RBP4.9□□□□□ -1.62
LIMA1-203ENST00000547825 TOLLIPQ9H0E2 274 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 SIRT3Q9NTG7 399 aaPredicted RBP4.9□□□□□ -1.62
LIMA1-203ENST00000547825 SLCO1C1Q9NYB5 712 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 APOBEC3BQ9UH17 382 aaKnown RBP4.9□□□□□ -1.62
LIMA1-203ENST00000547825 GPR34Q9UPC5 381 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 FOXJ3Q9UPW0 622 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 SLC7A11Q9UPY5 501 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 SIGLEC7Q9Y286 467 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 WIF1Q9Y5W5 379 aa4.9□□□□□ -1.62
LIMA1-203ENST00000547825 CENPVL1A0A0U1RR11 272 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 A0A1W2PPH5 198 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 J3KRW8 73 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 BCL2L11O43521 198 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 AK1P00568 194 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 PDGFBP01127 241 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-203ENST00000547825 FABP4P15090 132 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 FCGR2CP31995 323 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 P2RY2P41231 377 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 RAB11AP62491 216 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 REEP5Q00765 189 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 EEF1A1P5Q5VTE0 462 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF660Q6AZW8 331 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-203ENST00000547825 PWWP2BQ6NUJ5 590 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 KIRREL2Q6UWL6 708 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 HSD17B13Q7Z5P4 300 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF561Q8N587 486 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 OR51A4Q8NGJ6 313 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 SLC2A12Q8TD20 617 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 RXFP4Q8TDU9 374 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 ATOH1Q92858 354 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-203ENST00000547825 THOC3Q96J01 351 aaKnown RBP4.9□□□□□ -1.63
LIMA1-203ENST00000547825 TMEM59Q9BXS4 323 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 SLC19A3Q9BZV2 496 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 TLNRD1Q9H1K6 362 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 METTL7AQ9H8H3 244 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 ADGRL4Q9HBW9 690 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 BCL2L10Q9HD36 194 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 DSPPQ9NZW4 1301 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 SPTAN1Q13813 2472 aaKnown RBP4.9□□□□□ -1.63
LIMA1-203ENST00000547825 ZNF724A8MTY0 619 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 BET1O15155 118 aa4.9□□□□□ -1.63
LIMA1-203ENST00000547825 RAD51DO75771 328 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms