RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 RNF122Q9H9V4 155 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 B3GNT2Q9NY97 397 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 P2RY10O00398 339 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 MRPL33O75394 65 aaKnown RBP12.55□□□□□ -0.4
VPS33A-209ENST00000544349 CFDP00746 253 aaPredicted RBP12.55□□□□□ -0.4
VPS33A-209ENST00000544349 CD3DP04234 171 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 GTF2F2P13984 249 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 HTR2CP28335 458 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 OR3A3P47888 321 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 TSPAN5P62079 268 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 HIST1H3AP68431 136 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 EXOSC2Q13868 293 aaKnown RBP12.55□□□□□ -0.4
VPS33A-209ENST00000544349 MOGAT2Q3SYC2 334 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 HIST2H3PS2Q5TEC6 136 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 TMEM244Q5VVB8 128 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 HIST2H3AQ71DI3 136 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 CHMP1BQ7LBR1 199 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 SLC36A1Q7Z2H8 476 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.55□□□□□ -0.4
VPS33A-209ENST00000544349 TUSC5Q8IXB3 177 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 SPICQ8N5J4 248 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 OR51S1Q8NGJ8 323 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 OR8S1Q8NH09 359 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 BCO1Q9HAY6 547 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 DIABLOQ9NR28 239 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 TMEM38BQ9NVV0 291 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 HHLA2Q9UM44 414 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 RHBDD3Q9Y3P4 386 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 CELSR3Q9NYQ7 3312 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 ZNF724A8MTY0 619 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 CREBL2O60519 120 aaPredicted RBP12.55□□□□□ -0.4
VPS33A-209ENST00000544349 TPPPO94811 219 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 IGHG3P01860 377 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 CSF1P09603 554 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 UBCP0CG48 685 aaKnown RBP12.55□□□□□ -0.4
VPS33A-209ENST00000544349 ACHEP22303 614 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 ANOS1P23352 680 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 PSMA6P60900 246 aaKnown RBP12.55□□□□□ -0.4
VPS33A-209ENST00000544349 RBMS2Q15434 407 aaKnown RBP12.55□□□□□ -0.4
VPS33A-209ENST00000544349 IGFL3Q6UXB1 125 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 ELMOD2Q8IZ81 293 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 OR8H3Q8N146 312 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 ZADH2Q8N4Q0 377 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 TNRC6AQ8NDV7 1962 aaKnown RBP12.55□□□□□ -0.4
VPS33A-209ENST00000544349 SNIP1Q8TAD8 396 aaKnown RBP12.55□□□□□ -0.4
VPS33A-209ENST00000544349 PBOV1Q9GZY1 135 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 GPR35Q9HC97 309 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 PARPBPQ9NWS1 579 aa12.55□□□□□ -0.4
VPS33A-209ENST00000544349 RPS10-NUDT3A0A1W2PQS6 291 aa12.54□□□□□ -0.4
VPS33A-209ENST00000544349 NOS1APO75052 506 aaPredicted RBP12.54□□□□□ -0.4
VPS33A-209ENST00000544349 SIX6O95475 246 aa12.54□□□□□ -0.4
VPS33A-209ENST00000544349 TTRP02766 147 aa12.54□□□□□ -0.4
VPS33A-209ENST00000544349 IL5P05113 134 aa12.54□□□□□ -0.4
VPS33A-209ENST00000544349 CD2P06729 351 aa12.54□□□□□ -0.4
VPS33A-209ENST00000544349 PRKXP51817 358 aa12.54□□□□□ -0.4
VPS33A-209ENST00000544349 GRB2P62993 217 aaKnown RBP12.54□□□□□ -0.4
VPS33A-209ENST00000544349 RNPS1Q15287 305 aaKnown RBP12.54□□□□□ -0.4
VPS33A-209ENST00000544349 CEACAM16Q2WEN9 425 aa12.54□□□□□ -0.4
VPS33A-209ENST00000544349 TSPO2Q5TGU0 170 aa12.54□□□□□ -0.4
VPS33A-209ENST00000544349 ZNF627Q7L945 461 aa12.54□□□□□ -0.4
VPS33A-209ENST00000544349 JAGN1Q8N5M9 183 aa12.54□□□□□ -0.4
VPS33A-209ENST00000544349 GPX8Q8TED1 209 aa12.54□□□□□ -0.4
VPS33A-209ENST00000544349 LINC00470Q9BZP3 86 aa12.54□□□□□ -0.4
VPS33A-209ENST00000544349 SLCO5A1Q9H2Y9 848 aa12.54□□□□□ -0.4
VPS33A-209ENST00000544349 MOB1AQ9H8S9 216 aa12.54□□□□□ -0.4
VPS33A-209ENST00000544349 ZMAT3Q9HA38 289 aaKnown RBP12.54□□□□□ -0.4
VPS33A-209ENST00000544349 CALHM2Q9HA72 323 aa12.54□□□□□ -0.4
VPS33A-209ENST00000544349 CKLFQ9UBR5 152 aa12.54□□□□□ -0.4
VPS33A-209ENST00000544349 LDLRAD4O15165 306 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 RLN1P04808 185 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 GIPP09681 153 aaPredicted RBP12.53□□□□□ -0.4
VPS33A-209ENST00000544349 ACSM4P0C7M7 580 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 CXCL2P19875 107 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 CTSSP25774 331 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 PRSS3P35030 304 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 P2RX3P56373 397 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 GLT8D1Q68CQ7 371 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 ADGRE4PQ86SQ3 457 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 LYPD6Q86Y78 171 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 OR4D6Q8NGJ1 314 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 FBXO17Q96EF6 278 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 FOXB1Q99853 325 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 SLC17A5Q9NRA2 495 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 WASF3Q9UPY6 502 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 SLC5A6Q9Y289 635 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 SSUH2Q9Y2M2 353 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 WIPF3A6NGB9 483 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 CST2P09228 141 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 AKAIN1P0CW23 69 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 CD37P11049 281 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 FAUP35544 74 aaKnown RBP12.53□□□□□ -0.4
VPS33A-209ENST00000544349 ZNF121P58317 390 aaPredicted RBP12.53□□□□□ -0.4
VPS33A-209ENST00000544349 GRK1Q15835 563 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 OR6M1Q8NGM8 313 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 SEH1LQ96EE3 360 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 CHST6Q9GZX3 395 aa12.53□□□□□ -0.4
VPS33A-209ENST00000544349 SNRPGP15A8MWD9 76 aa12.52□□□□□ -0.4
VPS33A-209ENST00000544349 M0QYG6 137 aa12.52□□□□□ -0.4
VPS33A-209ENST00000544349 CX3CR1P49238 355 aa12.52□□□□□ -0.4
VPS33A-209ENST00000544349 H2BFSP57053 126 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms