RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 FRRS1LQ9P0K9 344 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 WSB1Q9Y6I7 421 aa11.1□□□□□ -0.63
USP3-203ENST00000538686 NPIPA2E9PIF3 369 aa11.09□□□□□ -0.63
USP3-203ENST00000538686 WNT10BO00744 389 aa11.09□□□□□ -0.63
USP3-203ENST00000538686 UPK3AO75631 287 aa11.09□□□□□ -0.63
USP3-203ENST00000538686 DDNO94850 711 aaPredicted RBP11.09□□□□□ -0.63
USP3-203ENST00000538686 FUT1P19526 365 aa11.09□□□□□ -0.63
USP3-203ENST00000538686 PPP1CCP36873 323 aaKnown RBP11.09□□□□□ -0.63
USP3-203ENST00000538686 FAM3BP58499 235 aaPredicted RBP11.09□□□□□ -0.63
USP3-203ENST00000538686 PRPS1P60891 318 aa11.09□□□□□ -0.63
USP3-203ENST00000538686 BTG2P78543 158 aa11.09□□□□□ -0.63
USP3-203ENST00000538686 CFAP161Q6P656 301 aa11.09□□□□□ -0.63
USP3-203ENST00000538686 TPRG1Q6ZUI0 275 aa11.09□□□□□ -0.63
USP3-203ENST00000538686 TRAPPC6BQ86SZ2 158 aa11.09□□□□□ -0.63
USP3-203ENST00000538686 FAM213BQ8TBF2 198 aa11.09□□□□□ -0.63
USP3-203ENST00000538686 TSLPQ969D9 159 aa11.09□□□□□ -0.63
USP3-203ENST00000538686 RBMXL1Q96E39 390 aaKnown RBP11.09□□□□□ -0.63
USP3-203ENST00000538686 SMIM12Q96EX1 92 aa11.09□□□□□ -0.63
USP3-203ENST00000538686 IMMP2LQ96T52 175 aa11.09□□□□□ -0.63
USP3-203ENST00000538686 RBKSQ9H477 322 aa11.09□□□□□ -0.63
USP3-203ENST00000538686 MTHFD2LQ9H903 347 aaPredicted RBP11.09□□□□□ -0.63
USP3-203ENST00000538686 RXFP3Q9NSD7 469 aa11.09□□□□□ -0.63
USP3-203ENST00000538686 GSKIPQ9P0R6 139 aa11.09□□□□□ -0.63
USP3-203ENST00000538686 SERGEFQ9UGK8 458 aa11.09□□□□□ -0.63
USP3-203ENST00000538686 GPR132Q9UNW8 380 aa11.09□□□□□ -0.63
USP3-203ENST00000538686 CASTOR2A6NHX0 329 aa11.08□□□□□ -0.63
USP3-203ENST00000538686 E5RGE8 158 aa11.08□□□□□ -0.63
USP3-203ENST00000538686 KNG1P01042 644 aa11.08□□□□□ -0.63
USP3-203ENST00000538686 CTSAP10619 480 aa11.08□□□□□ -0.63
USP3-203ENST00000538686 IRF1P10914 325 aa11.08□□□□□ -0.63
USP3-203ENST00000538686 RPS4Y1P22090 263 aaKnown RBP11.08□□□□□ -0.63
USP3-203ENST00000538686 AK4P27144 223 aaPredicted RBP11.08□□□□□ -0.63
USP3-203ENST00000538686 HRH1P35367 487 aa11.08□□□□□ -0.63
USP3-203ENST00000538686 ELLP55199 621 aaPredicted RBP11.08□□□□□ -0.63
USP3-203ENST00000538686 RND3P61587 244 aa11.08□□□□□ -0.63
USP3-203ENST00000538686 BATFQ16520 125 aa11.08□□□□□ -0.63
USP3-203ENST00000538686 SGPP2Q8IWX5 399 aa11.08□□□□□ -0.63
USP3-203ENST00000538686 MARCH1Q8TCQ1 289 aa11.08□□□□□ -0.63
USP3-203ENST00000538686 GPR119Q8TDV5 335 aa11.08□□□□□ -0.63
USP3-203ENST00000538686 ZNF480Q8WV37 535 aa11.08□□□□□ -0.63
USP3-203ENST00000538686 MOB3AQ96BX8 217 aa11.08□□□□□ -0.63
USP3-203ENST00000538686 PYGO2Q9BRQ0 406 aa11.08□□□□□ -0.63
USP3-203ENST00000538686 PLK3Q9H4B4 646 aa11.08□□□□□ -0.63
USP3-203ENST00000538686 CKLFQ9UBR5 152 aa11.08□□□□□ -0.63
USP3-203ENST00000538686 HSPB7Q9UBY9 170 aa11.08□□□□□ -0.63
USP3-203ENST00000538686 NSG2Q9Y328 171 aa11.08□□□□□ -0.63
USP3-203ENST00000538686 THSD7BQ9C0I4 1608 aa11.08□□□□□ -0.64
USP3-203ENST00000538686 TRAV27A0A087WT01 109 aa11.08□□□□□ -0.64
USP3-203ENST00000538686 ZNF705FA8MVS1 300 aaPredicted RBP11.08□□□□□ -0.64
USP3-203ENST00000538686 B3GAT3O94766 335 aa11.08□□□□□ -0.64
USP3-203ENST00000538686 ZNF705DP0CH99 300 aaPredicted RBP11.08□□□□□ -0.64
USP3-203ENST00000538686 ZNF705BP0CI00 300 aaPredicted RBP11.08□□□□□ -0.64
USP3-203ENST00000538686 KLK2P20151 261 aa11.08□□□□□ -0.64
USP3-203ENST00000538686 FPR2P25090 351 aa11.08□□□□□ -0.64
USP3-203ENST00000538686 ZNF136P52737 540 aa11.08□□□□□ -0.64
USP3-203ENST00000538686 RPS24P62847 133 aaKnown RBP11.08□□□□□ -0.64
USP3-203ENST00000538686 ELOA3BQ3SY89 546 aa11.08□□□□□ -0.64
USP3-203ENST00000538686 C1orf185Q5T7R7 199 aa11.08□□□□□ -0.64
USP3-203ENST00000538686 ZNF836Q6ZNA1 936 aa11.08□□□□□ -0.64
USP3-203ENST00000538686 SLC16A9Q7RTY1 509 aa11.08□□□□□ -0.64
USP3-203ENST00000538686 KLHDC9Q8NEP7 349 aa11.08□□□□□ -0.64
USP3-203ENST00000538686 ELOA3Q8NG57 546 aa11.08□□□□□ -0.64
USP3-203ENST00000538686 OR51A7Q8NH64 312 aa11.08□□□□□ -0.64
USP3-203ENST00000538686 FAM174AQ8TBP5 190 aa11.08□□□□□ -0.64
USP3-203ENST00000538686 ZCCHC14Q8WYQ9 949 aaKnown RBP11.08□□□□□ -0.64
USP3-203ENST00000538686 IGSF21Q96ID5 467 aa11.08□□□□□ -0.64
USP3-203ENST00000538686 ZNF514Q96K75 400 aaPredicted RBP11.08□□□□□ -0.64
USP3-203ENST00000538686 TBX15Q96SF7 602 aa11.08□□□□□ -0.64
USP3-203ENST00000538686 C5AR2Q9P296 337 aa11.08□□□□□ -0.64
USP3-203ENST00000538686 TUBD1Q9UJT1 453 aa11.08□□□□□ -0.64
USP3-203ENST00000538686 WDR45Q9Y484 360 aa11.08□□□□□ -0.64
USP3-203ENST00000538686 DNAJC25-GNG10A0A024R161 153 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 MEGF11A6BM72 1044 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 CCDC85CA6NKD9 419 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 MEIS3P2A8K0S8 358 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 ZNF264O43296 627 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 GPR137BO60478 399 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 ZNF217O75362 1048 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 SYNGR4O95473 234 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 IL33O95760 270 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 MBPP02686 304 aaPredicted RBP11.07□□□□□ -0.64
USP3-203ENST00000538686 HIST1H1CP16403 213 aaKnown RBP11.07□□□□□ -0.64
USP3-203ENST00000538686 CTHP32929 405 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 WNT5AP41221 380 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 APOBEC1P41238 236 aaKnown RBP11.07□□□□□ -0.64
USP3-203ENST00000538686 ARF6P62330 175 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 REEP5Q00765 189 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 FOXF1Q12946 379 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 SLC9A3R2Q15599 337 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 OR1Q1Q15612 314 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 CCSMST1Q4G0I0 132 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 ZNF66Q6ZN08 573 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 TEX43Q6ZNM6 134 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 Q7L0L9 218 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 CYB561D1Q8N8Q1 229 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 OR4K13Q8NH42 304 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 TSEN15Q8WW01 171 aaKnown RBP11.07□□□□□ -0.64
USP3-203ENST00000538686 TMEM40Q8WWA1 233 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 FGGYQ96C11 551 aa11.07□□□□□ -0.64
USP3-203ENST00000538686 TIFAQ96CG3 184 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms