RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 ZNF12P17014 697 aa17.28■□□□□ 0.36
VPS28-206ENST00000526734 ZFP36P26651 326 aaKnown RBP17.28■□□□□ 0.36
VPS28-206ENST00000526734 DCTDP32321 178 aa17.28■□□□□ 0.36
VPS28-206ENST00000526734 PRAMEF6Q5VXH4 476 aa17.28■□□□□ 0.36
VPS28-206ENST00000526734 PHC2Q8IXK0 858 aa17.28■□□□□ 0.36
VPS28-206ENST00000526734 OR8B3Q8NGG8 313 aa17.28■□□□□ 0.36
VPS28-206ENST00000526734 OR8S1Q8NH09 359 aa17.28■□□□□ 0.36
VPS28-206ENST00000526734 ZNF418Q8TF45 676 aaPredicted RBP17.28■□□□□ 0.36
VPS28-206ENST00000526734 CENPNQ96H22 339 aaPredicted RBP17.28■□□□□ 0.36
VPS28-206ENST00000526734 OR8B2Q96RD0 313 aa17.28■□□□□ 0.36
VPS28-206ENST00000526734 TMEM246Q9BRR3 403 aa17.28■□□□□ 0.36
VPS28-206ENST00000526734 SSBP3Q9BWW4 388 aaPredicted RBP17.28■□□□□ 0.36
VPS28-206ENST00000526734 H2AFY2Q9P0M6 372 aaPredicted RBP17.28■□□□□ 0.36
VPS28-206ENST00000526734 DNHD1Q96M86 4753 aa17.28■□□□□ 0.36
VPS28-206ENST00000526734 LOC105371242A0A075B767 164 aa17.27■□□□□ 0.36
VPS28-206ENST00000526734 IGHV3-64DA0A0J9YX35 117 aa17.27■□□□□ 0.36
VPS28-206ENST00000526734 CCDC182A6NF36 153 aa17.27■□□□□ 0.36
VPS28-206ENST00000526734 SLC22A31A6NKX4 558 aa17.27■□□□□ 0.36
VPS28-206ENST00000526734 ZNF254O75437 659 aa17.27■□□□□ 0.36
VPS28-206ENST00000526734 EPHA1P21709 976 aa17.27■□□□□ 0.36
VPS28-206ENST00000526734 GNALP38405 381 aa17.27■□□□□ 0.36
VPS28-206ENST00000526734 GSK3AP49840 483 aa17.27■□□□□ 0.36
VPS28-206ENST00000526734 HNRNPA0Q13151 305 aaKnown RBP17.27■□□□□ 0.36
VPS28-206ENST00000526734 OR8B8Q15620 311 aa17.27■□□□□ 0.36
VPS28-206ENST00000526734 MPPED2Q15777 294 aa17.27■□□□□ 0.36
VPS28-206ENST00000526734 KRTAP24-1Q3LI83 254 aa17.27■□□□□ 0.36
VPS28-206ENST00000526734 NXNL2Q5VZ03 156 aa17.27■□□□□ 0.36
VPS28-206ENST00000526734 C12orf73Q69YU5 71 aa17.27■□□□□ 0.36
VPS28-206ENST00000526734 C1orf229Q6ZS94 237 aaPredicted RBP17.27■□□□□ 0.36
VPS28-206ENST00000526734 CCDC121Q6ZUS5 278 aa17.27■□□□□ 0.36
VPS28-206ENST00000526734 AMIGO2Q86SJ2 522 aa17.27■□□□□ 0.36
VPS28-206ENST00000526734 LRTOMTQ8WZ04 291 aa17.27■□□□□ 0.36
VPS28-206ENST00000526734 CNN2Q99439 309 aaKnown RBP17.27■□□□□ 0.36
VPS28-206ENST00000526734 MRI1Q9BV20 369 aa17.27■□□□□ 0.36
VPS28-206ENST00000526734 MROQ9BYG7 248 aa17.27■□□□□ 0.36
VPS28-206ENST00000526734 OCEL1Q9H607 264 aa17.27■□□□□ 0.36
VPS28-206ENST00000526734 UFSP2Q9NUQ7 469 aa17.27■□□□□ 0.36
VPS28-206ENST00000526734 LRP12Q9Y561 859 aa17.27■□□□□ 0.36
VPS28-206ENST00000526734 LGALS8O00214 317 aa17.26■□□□□ 0.35
VPS28-206ENST00000526734 PHYHO14832 338 aa17.26■□□□□ 0.35
VPS28-206ENST00000526734 NDUFA2O43678 99 aa17.26■□□□□ 0.35
VPS28-206ENST00000526734 PRKYO43930 277 aa17.26■□□□□ 0.35
VPS28-206ENST00000526734 AVPP01185 164 aa17.26■□□□□ 0.35
VPS28-206ENST00000526734 GNB2P62879 340 aa17.26■□□□□ 0.35
VPS28-206ENST00000526734 IL5RAQ01344 420 aa17.26■□□□□ 0.35
VPS28-206ENST00000526734 ROM1Q03395 351 aa17.26■□□□□ 0.35
VPS28-206ENST00000526734 LRRN1Q6UXK5 716 aa17.26■□□□□ 0.35
VPS28-206ENST00000526734 USP43Q70EL4 1123 aa17.26■□□□□ 0.35
VPS28-206ENST00000526734 MEPCEQ7L2J0 689 aaKnown RBP17.26■□□□□ 0.35
VPS28-206ENST00000526734 GID4Q8IVV7 300 aa17.26■□□□□ 0.35
VPS28-206ENST00000526734 C10orf67Q8IYJ2 551 aa17.26■□□□□ 0.35
VPS28-206ENST00000526734 TMEM163Q8TC26 289 aa17.26■□□□□ 0.35
VPS28-206ENST00000526734 ZFAND2BQ8WV99 257 aa17.26■□□□□ 0.35
VPS28-206ENST00000526734 JMJD8Q96S16 334 aa17.26■□□□□ 0.35
VPS28-206ENST00000526734 BRD7Q9NPI1 651 aa17.26■□□□□ 0.35
VPS28-206ENST00000526734 OPN4Q9UHM6 478 aa17.26■□□□□ 0.35
VPS28-206ENST00000526734 KLHDC2Q9Y2U9 406 aa17.26■□□□□ 0.35
VPS28-206ENST00000526734 INSIG2Q9Y5U4 225 aa17.26■□□□□ 0.35
VPS28-206ENST00000526734 MPC1Q9Y5U8 109 aa17.26■□□□□ 0.35
VPS28-206ENST00000526734 A6NLC8 198 aa17.25■□□□□ 0.35
VPS28-206ENST00000526734 ANXA2P2A6NMY6 339 aa17.25■□□□□ 0.35
VPS28-206ENST00000526734 MITFO75030 526 aaPredicted RBP17.25■□□□□ 0.35
VPS28-206ENST00000526734 FSHBP01225 129 aa17.25■□□□□ 0.35
VPS28-206ENST00000526734 PITPNBP48739 271 aa17.25■□□□□ 0.35
VPS28-206ENST00000526734 NPY4RP50391 375 aa17.25■□□□□ 0.35
VPS28-206ENST00000526734 SEC61A1P61619 476 aaKnown RBP17.25■□□□□ 0.35
VPS28-206ENST00000526734 EFNB1P98172 346 aa17.25■□□□□ 0.35
VPS28-206ENST00000526734 ZNF154Q13106 437 aa17.25■□□□□ 0.35
VPS28-206ENST00000526734 GFOD2Q3B7J2 385 aa17.25■□□□□ 0.35
VPS28-206ENST00000526734 ZFP1Q6P2D0 407 aa17.25■□□□□ 0.35
VPS28-206ENST00000526734 BTNL3Q6UXE8 466 aa17.25■□□□□ 0.35
VPS28-206ENST00000526734 DEFB108BQ8NET1 73 aa17.25■□□□□ 0.35
VPS28-206ENST00000526734 PAPOLGQ9BWT3 736 aaKnown RBP17.25■□□□□ 0.35
VPS28-206ENST00000526734 RNPEPL1Q9HAU8 725 aa17.25■□□□□ 0.35
VPS28-206ENST00000526734 C1orf123Q9NWV4 160 aa17.25■□□□□ 0.35
VPS28-206ENST00000526734 HAO2Q9NYQ3 351 aa17.25■□□□□ 0.35
VPS28-206ENST00000526734 AUP1Q9Y679 476 aa17.25■□□□□ 0.35
VPS28-206ENST00000526734 TRAV38-1A0A0B4J264 116 aa17.24■□□□□ 0.35
VPS28-206ENST00000526734 A0A0U1RQV5 110 aa17.24■□□□□ 0.35
VPS28-206ENST00000526734 TRAPPC2LH3BP13 241 aa17.24■□□□□ 0.35
VPS28-206ENST00000526734 ZNF205O95201 554 aa17.24■□□□□ 0.35
VPS28-206ENST00000526734 PPIAL4GP0DN37 164 aa17.24■□□□□ 0.35
VPS28-206ENST00000526734 ATP6V1B1P15313 513 aa17.24■□□□□ 0.35
VPS28-206ENST00000526734 ADRA2CP18825 462 aa17.24■□□□□ 0.35
VPS28-206ENST00000526734 ACTR3P61158 418 aa17.24■□□□□ 0.35
VPS28-206ENST00000526734 ZNF829Q3KNS6 432 aaPredicted RBP17.24■□□□□ 0.35
VPS28-206ENST00000526734 AADACL4Q5VUY2 407 aa17.24■□□□□ 0.35
VPS28-206ENST00000526734 ZNF679Q8IYX0 411 aa17.24■□□□□ 0.35
VPS28-206ENST00000526734 TCEANCQ8N8B7 351 aa17.24■□□□□ 0.35
VPS28-206ENST00000526734 OR8B4Q96RC9 309 aa17.24■□□□□ 0.35
VPS28-206ENST00000526734 CIB1Q99828 191 aa17.24■□□□□ 0.35
VPS28-206ENST00000526734 MICU1Q9BPX6 476 aa17.24■□□□□ 0.35
VPS28-206ENST00000526734 RBM4BQ9BQ04 359 aaKnown RBP17.24■□□□□ 0.35
VPS28-206ENST00000526734 C19orf24Q9BVV8 132 aa17.24■□□□□ 0.35
VPS28-206ENST00000526734 SUCNR1Q9BXA5 334 aa17.24■□□□□ 0.35
VPS28-206ENST00000526734 GABARAPL3Q9BY60 117 aa17.24■□□□□ 0.35
VPS28-206ENST00000526734 ZNF319Q9P2F9 582 aa17.24■□□□□ 0.35
VPS28-206ENST00000526734 CLN8Q9UBY8 286 aa17.24■□□□□ 0.35
VPS28-206ENST00000526734 OAZ3Q9UMX2 235 aa17.24■□□□□ 0.35
VPS28-206ENST00000526734 CST4P01036 141 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms