RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 PATZ1Q9HBE1 687 aaKnown RBP8.15□□□□□ -1.1
RNF4-221ENST00000513643 HIF1ANQ9NWT6 349 aa8.15□□□□□ -1.1
RNF4-221ENST00000513643 CLN6Q9NWW5 311 aa8.15□□□□□ -1.1
RNF4-221ENST00000513643 ZNF391Q9UJN7 358 aa8.15□□□□□ -1.1
RNF4-221ENST00000513643 LAMP5Q9UJQ1 280 aa8.15□□□□□ -1.1
RNF4-221ENST00000513643 NOP16Q9Y3C1 178 aaKnown RBP8.15□□□□□ -1.1
RNF4-221ENST00000513643 TMEM14AQ9Y6G1 99 aa8.15□□□□□ -1.1
RNF4-221ENST00000513643 ARHGAP32A7KAX9 2087 aa8.15□□□□□ -1.11
RNF4-221ENST00000513643 GGT3PA6NGU5 568 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 A8MXK9 166 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 DLGAP1O14490 977 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 PNPP00491 289 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 AVPP01185 164 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 ANXA2P07355 339 aaKnown RBP8.14□□□□□ -1.11
RNF4-221ENST00000513643 ANPEPP15144 967 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 MDH2P40926 338 aaKnown RBP8.14□□□□□ -1.11
RNF4-221ENST00000513643 ISL1P61371 349 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 RPS7P62081 194 aaKnown RBP8.14□□□□□ -1.11
RNF4-221ENST00000513643 PAX2Q02962 417 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 EGR3Q06889 387 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 MPPED2Q15777 294 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 OCLNQ16625 522 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 KCTD18Q6PI47 426 aaPredicted RBP8.14□□□□□ -1.11
RNF4-221ENST00000513643 PEG10Q86TG7 708 aaKnown RBP8.14□□□□□ -1.11
RNF4-221ENST00000513643 WDR86Q86TI4 376 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 MOGAT3Q86VF5 341 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 PQLC1Q8N2U9 271 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 OR8B12Q8NGG6 310 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 OR51F2Q8NH61 342 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 ZNF420Q8TAQ5 688 aaPredicted RBP8.14□□□□□ -1.11
RNF4-221ENST00000513643 RAB39BQ96DA2 213 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 RAB3IPQ96QF0 476 aaPredicted RBP8.14□□□□□ -1.11
RNF4-221ENST00000513643 MROQ9BYG7 248 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 FGF23Q9GZV9 251 aaPredicted RBP8.14□□□□□ -1.11
RNF4-221ENST00000513643 SHARPINQ9H0F6 387 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 TLNRD1Q9H1K6 362 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 NARFLQ9H6Q4 476 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 PPP1R3EQ9H7J1 279 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 NUFIP1Q9UHK0 495 aaKnown RBP8.14□□□□□ -1.11
RNF4-221ENST00000513643 MRM2Q9UI43 246 aaKnown RBP8.14□□□□□ -1.11
RNF4-221ENST00000513643 RHBDD3Q9Y3P4 386 aa8.14□□□□□ -1.11
RNF4-221ENST00000513643 TMEM269A0A1B0GVZ9 245 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 CYB5R3P00387 301 aaPredicted RBP8.13□□□□□ -1.11
RNF4-221ENST00000513643 FSHBP01225 129 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 MRPL3P09001 348 aaKnown RBP8.13□□□□□ -1.11
RNF4-221ENST00000513643 OR2T7P0C7T2 308 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 PSMB10P40306 273 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 CXCR4P61073 352 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 OR8G1Q15617 311 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 ZNF404Q494X3 552 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 PRAMEF6Q5VXH4 476 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 ZNF322Q6U7Q0 402 aaPredicted RBP8.13□□□□□ -1.11
RNF4-221ENST00000513643 ZNF841Q6ZN19 808 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 SSX6Q7RTT6 188 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 KRT77Q7Z794 578 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 GLCCI1Q86VQ1 547 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.13□□□□□ -1.11
RNF4-221ENST00000513643 SLC35F2Q8IXU6 374 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 GALNT4Q8N4A0 578 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 SPICQ8N5J4 248 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 CSNK2A3Q8NEV1 391 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 OR2T27Q8NH04 317 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 RHOXF1Q8NHV9 184 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 PPP1R14AQ96A00 147 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 ITPKCQ96DU7 683 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 PGAM5Q96HS1 289 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 C9orf16Q9BUW7 83 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 BEX2Q9BXY8 128 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 TMPRSS13Q9BYE2 586 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 RIBC2Q9H4K1 309 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 DNAJC27Q9NZQ0 273 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 H2AFY2Q9P0M6 372 aaPredicted RBP8.13□□□□□ -1.11
RNF4-221ENST00000513643 OPN4Q9UHM6 478 aa8.13□□□□□ -1.11
RNF4-221ENST00000513643 IGHV3-64DA0A0J9YX35 117 aa8.12□□□□□ -1.11
RNF4-221ENST00000513643 A0A1B0GTI1 187 aa8.12□□□□□ -1.11
RNF4-221ENST00000513643 A0A1W2PQL4 384 aaPredicted RBP8.12□□□□□ -1.11
RNF4-221ENST00000513643 CEACAM18A8MTB9 384 aa8.12□□□□□ -1.11
RNF4-221ENST00000513643 TRAPPC2LH3BP13 241 aa8.12□□□□□ -1.11
RNF4-221ENST00000513643 J3QLI3 93 aa8.12□□□□□ -1.11
RNF4-221ENST00000513643 PSMD9O00233 223 aa8.12□□□□□ -1.11
RNF4-221ENST00000513643 PHYHO14832 338 aa8.12□□□□□ -1.11
RNF4-221ENST00000513643 SLC16A6O15403 523 aa8.12□□□□□ -1.11
RNF4-221ENST00000513643 MAGEB4O15481 346 aaPredicted RBP8.12□□□□□ -1.11
RNF4-221ENST00000513643 TBX1O43435 398 aa8.12□□□□□ -1.11
RNF4-221ENST00000513643 FAM20BO75063 409 aa8.12□□□□□ -1.11
RNF4-221ENST00000513643 ENTPD6O75354 484 aa8.12□□□□□ -1.11
RNF4-221ENST00000513643 SULT1C4O75897 302 aa8.12□□□□□ -1.11
RNF4-221ENST00000513643 TTRP02766 147 aa8.12□□□□□ -1.11
RNF4-221ENST00000513643 ATP6V1B1P15313 513 aa8.12□□□□□ -1.11
RNF4-221ENST00000513643 PCMT1P22061 227 aa8.12□□□□□ -1.11
RNF4-221ENST00000513643 CCL1P22362 96 aa8.12□□□□□ -1.11
RNF4-221ENST00000513643 GATA3P23771 443 aa8.12□□□□□ -1.11
RNF4-221ENST00000513643 CDC42P60953 191 aa8.12□□□□□ -1.11
RNF4-221ENST00000513643 SEC61A1P61619 476 aaKnown RBP8.12□□□□□ -1.11
RNF4-221ENST00000513643 HOXA4Q00056 320 aaPredicted RBP8.12□□□□□ -1.11
RNF4-221ENST00000513643 MFGE8Q08431 387 aaPredicted RBP8.12□□□□□ -1.11
RNF4-221ENST00000513643 POU4F2Q12837 409 aa8.12□□□□□ -1.11
RNF4-221ENST00000513643 TIGD6Q17RP2 521 aa8.12□□□□□ -1.11
RNF4-221ENST00000513643 FAM201AQ5SY85 155 aa8.12□□□□□ -1.11
RNF4-221ENST00000513643 TEX36Q5VZQ5 186 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms