RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 AKR7A3O95154 331 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 LGI1O95970 557 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 IGHG1P01857 330 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 BPGMP07738 259 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 THRBP10828 461 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 NCF2P19878 526 aaPredicted RBP3.22□□□□□ -1.89
USP54-217ENST00000498213 EDN2P20800 178 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 GSTM3P21266 225 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 ANOS1P23352 680 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 EDNRAP25101 427 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 RBM34P42696 430 aaKnown RBP3.22□□□□□ -1.89
USP54-217ENST00000498213 GUCA1AP43080 201 aaPredicted RBP3.22□□□□□ -1.89
USP54-217ENST00000498213 RGS6P49758 472 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 ARHGDIAP52565 204 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 UCP2P55851 309 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 CLDN17P56750 224 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 SEC61BP60468 96 aaKnown RBP3.22□□□□□ -1.89
USP54-217ENST00000498213 NCALDP61601 193 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 MRPS34P82930 218 aaKnown RBP3.22□□□□□ -1.89
USP54-217ENST00000498213 ARF1P84077 181 aaKnown RBP3.22□□□□□ -1.89
USP54-217ENST00000498213 RBBP4Q09028 425 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 FUT5Q11128 374 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 DCTN2Q13561 401 aaKnown RBP3.22□□□□□ -1.89
USP54-217ENST00000498213 NPTX1Q15818 432 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 MAPK14Q16539 360 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 HIST3H3Q16695 136 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 CEACAM16Q2WEN9 425 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 ANKRD26P1Q6NSI1 321 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 KCTD18Q6PI47 426 aaPredicted RBP3.22□□□□□ -1.89
USP54-217ENST00000498213 RPS27LQ71UM5 84 aaKnown RBP3.22□□□□□ -1.89
USP54-217ENST00000498213 NOXA1Q86UR1 476 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 MDP1Q86V88 176 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 RANBP3LQ86VV4 465 aaPredicted RBP3.22□□□□□ -1.89
USP54-217ENST00000498213 C1orf87Q8N0U7 546 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 SLC22A24Q8N4F4 322 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 ZNF283Q8N7M2 679 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 SPERTQ8NA61 448 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 SLC30A7Q8NEW0 376 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 DMBX1Q8NFW5 382 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 OR6N1Q8NGY5 312 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 SLC38A5Q8WUX1 472 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 ITCHQ96J02 903 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 SAMD8Q96LT4 415 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 OR52E6Q96RD3 313 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 ASCL2Q99929 193 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 MRPL37Q9BZE1 423 aaKnown RBP3.22□□□□□ -1.89
USP54-217ENST00000498213 ULBP2Q9BZM5 246 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 OR11A1Q9GZK7 315 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 NDEL1Q9GZM8 345 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 SLC22A4Q9H015 551 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 TMEM38AQ9H6F2 299 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 MEAF6Q9HAF1 191 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 SIAEQ9HAT2 523 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 TMEM27Q9HBJ8 222 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 SDR39U1Q9NRG7 319 aaPredicted RBP3.22□□□□□ -1.89
USP54-217ENST00000498213 ZNF275Q9NSD4 429 aaPredicted RBP3.22□□□□□ -1.89
USP54-217ENST00000498213 INTS9Q9NV88 658 aaKnown RBP3.22□□□□□ -1.89
USP54-217ENST00000498213 AIG1Q9NVV5 245 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 ADPRHL2Q9NX46 363 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 GLTPQ9NZD2 209 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 OR5V1Q9UGF6 321 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 IL19Q9UHD0 177 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 PURGQ9UJV8 347 aaKnown RBP3.22□□□□□ -1.89
USP54-217ENST00000498213 ZNF229Q9UJW7 825 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 SLC13A4Q9UKG4 626 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 HSF4Q9ULV5 492 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 ZNF443Q9Y2A4 671 aaPredicted RBP3.22□□□□□ -1.89
USP54-217ENST00000498213 CAB39Q9Y376 341 aaPredicted RBP3.22□□□□□ -1.89
USP54-217ENST00000498213 AUP1Q9Y679 476 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 KCNE3Q9Y6H6 103 aa3.22□□□□□ -1.89
USP54-217ENST00000498213 HUWE1Q7Z6Z7 4374 aaKnown RBP3.21□□□□□ -1.89
USP54-217ENST00000498213 DNAH10Q8IVF4 4471 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 A0A0B4J2E0 115 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 MDFIC2A0A1B0GVS7 189 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 A0A1B0GX12 115 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 LRRC30A6NM36 301 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 TEX22C9J3V5 150 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 C9JVG2 144 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 NR5A2O00482 541 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 DVL1O14640 695 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 KLF11O14901 512 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 HDAC3O15379 428 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 CHP2O43745 196 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 OR6A2O95222 327 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 TGDSO95455 350 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 IGFBP1P08833 259 aaPredicted RBP3.21□□□□□ -1.9
USP54-217ENST00000498213 NQO1P15559 274 aaKnown RBP3.21□□□□□ -1.9
USP54-217ENST00000498213 IGLL1P15814 213 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 CDH2P19022 906 aaPredicted RBP3.21□□□□□ -1.9
USP54-217ENST00000498213 BGNP21810 368 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 ALDH3A1P30838 453 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 IFNA8P32881 189 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 APLNRP35414 380 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 MDH2P40926 338 aaKnown RBP3.21□□□□□ -1.9
USP54-217ENST00000498213 CSNK1A1P48729 337 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 MMP15P51511 669 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 DSTNP60981 165 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 ABCE1P61221 599 aaKnown RBP3.21□□□□□ -1.9
USP54-217ENST00000498213 PAX8Q06710 450 aa3.21□□□□□ -1.9
USP54-217ENST00000498213 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms