RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 MMP26Q9NRE1 261 aa17.12■□□□□ 0.33
HDAC4-209ENST00000487617 RNF7Q9UBF6 113 aa17.12■□□□□ 0.33
HDAC4-209ENST00000487617 OPN4Q9UHM6 478 aa17.12■□□□□ 0.33
HDAC4-209ENST00000487617 LRCH1Q9Y2L9 728 aa17.12■□□□□ 0.33
HDAC4-209ENST00000487617 POLR3KQ9Y2Y1 108 aaPredicted RBP17.12■□□□□ 0.33
HDAC4-209ENST00000487617 TRAPPC2LH3BP13 241 aa17.11■□□□□ 0.33
HDAC4-209ENST00000487617 M0R129 80 aa17.11■□□□□ 0.33
HDAC4-209ENST00000487617 PTBP3O95758 552 aaKnown RBP17.11■□□□□ 0.33
HDAC4-209ENST00000487617 EPHA1P21709 976 aa17.11■□□□□ 0.33
HDAC4-209ENST00000487617 CPT2P23786 658 aa17.11■□□□□ 0.33
HDAC4-209ENST00000487617 EPHA2P29317 976 aa17.11■□□□□ 0.33
HDAC4-209ENST00000487617 GSK3AP49840 483 aa17.11■□□□□ 0.33
HDAC4-209ENST00000487617 SLX4IPQ5VYV7 408 aa17.11■□□□□ 0.33
HDAC4-209ENST00000487617 ASRGL1Q7L266 308 aa17.11■□□□□ 0.33
HDAC4-209ENST00000487617 KRT77Q7Z794 578 aa17.11■□□□□ 0.33
HDAC4-209ENST00000487617 BOLLQ8N9W6 283 aaKnown RBP17.11■□□□□ 0.33
HDAC4-209ENST00000487617 C19orf18Q8NEA5 215 aa17.11■□□□□ 0.33
HDAC4-209ENST00000487617 DEFB108BQ8NET1 73 aa17.11■□□□□ 0.33
HDAC4-209ENST00000487617 OR8S1Q8NH09 359 aa17.11■□□□□ 0.33
HDAC4-209ENST00000487617 SSBP3Q9BWW4 388 aaPredicted RBP17.11■□□□□ 0.33
HDAC4-209ENST00000487617 SEMA6AQ9H2E6 1030 aa17.11■□□□□ 0.33
HDAC4-209ENST00000487617 RGCCQ9H4X1 137 aa17.11■□□□□ 0.33
HDAC4-209ENST00000487617 NIPAL2Q9H841 368 aa17.11■□□□□ 0.33
HDAC4-209ENST00000487617 C14orf119Q9NWQ9 140 aa17.11■□□□□ 0.33
HDAC4-209ENST00000487617 OR5V1Q9UGF6 321 aa17.11■□□□□ 0.33
HDAC4-209ENST00000487617 ENOPH1Q9UHY7 261 aa17.11■□□□□ 0.33
HDAC4-209ENST00000487617 LRP12Q9Y561 859 aa17.11■□□□□ 0.33
HDAC4-209ENST00000487617 MXRA5Q9NR99 2828 aa17.1■□□□□ 0.33
HDAC4-209ENST00000487617 A6NLC8 198 aa17.1■□□□□ 0.33
HDAC4-209ENST00000487617 ZAR1LA6NP61 321 aa17.1■□□□□ 0.33
HDAC4-209ENST00000487617 CCDC121Q6ZUS5 278 aa17.1■□□□□ 0.33
HDAC4-209ENST00000487617 NLRC3Q7RTR2 1065 aa17.1■□□□□ 0.33
HDAC4-209ENST00000487617 BCDIN3DQ7Z5W3 292 aaKnown RBP17.1■□□□□ 0.33
HDAC4-209ENST00000487617 TCEANCQ8N8B7 351 aa17.1■□□□□ 0.33
HDAC4-209ENST00000487617 OR8B3Q8NGG8 313 aa17.1■□□□□ 0.33
HDAC4-209ENST00000487617 NEIL1Q96FI4 390 aaPredicted RBP17.1■□□□□ 0.33
HDAC4-209ENST00000487617 CENPNQ96H22 339 aaPredicted RBP17.1■□□□□ 0.33
HDAC4-209ENST00000487617 OR8B2Q96RD0 313 aa17.1■□□□□ 0.33
HDAC4-209ENST00000487617 C19orf24Q9BVV8 132 aa17.1■□□□□ 0.33
HDAC4-209ENST00000487617 C1orf123Q9NWV4 160 aa17.1■□□□□ 0.33
HDAC4-209ENST00000487617 H2AFY2Q9P0M6 372 aaPredicted RBP17.1■□□□□ 0.33
HDAC4-209ENST00000487617 PSMD9O00233 223 aa17.09■□□□□ 0.33
HDAC4-209ENST00000487617 ZNF12P17014 697 aa17.09■□□□□ 0.33
HDAC4-209ENST00000487617 GNALP38405 381 aa17.09■□□□□ 0.33
HDAC4-209ENST00000487617 PSMA6P60900 246 aaKnown RBP17.09■□□□□ 0.33
HDAC4-209ENST00000487617 GNB2P62879 340 aa17.09■□□□□ 0.33
HDAC4-209ENST00000487617 HOXA4Q00056 320 aaPredicted RBP17.09■□□□□ 0.33
HDAC4-209ENST00000487617 ZNF154Q13106 437 aa17.09■□□□□ 0.33
HDAC4-209ENST00000487617 C12orf73Q69YU5 71 aa17.09■□□□□ 0.33
HDAC4-209ENST00000487617 KCTD18Q6PI47 426 aaPredicted RBP17.09■□□□□ 0.33
HDAC4-209ENST00000487617 DCDC5Q6ZRR9 648 aa17.09■□□□□ 0.33
HDAC4-209ENST00000487617 MEPCEQ7L2J0 689 aaKnown RBP17.09■□□□□ 0.33
HDAC4-209ENST00000487617 CSNK2A3Q8NEV1 391 aa17.09■□□□□ 0.33
HDAC4-209ENST00000487617 TMEM163Q8TC26 289 aa17.09■□□□□ 0.33
HDAC4-209ENST00000487617 CNN2Q99439 309 aaKnown RBP17.09■□□□□ 0.33
HDAC4-209ENST00000487617 CIB1Q99828 191 aa17.09■□□□□ 0.33
HDAC4-209ENST00000487617 PAPOLGQ9BWT3 736 aaKnown RBP17.09■□□□□ 0.33
HDAC4-209ENST00000487617 OAZ3Q9UMX2 235 aa17.09■□□□□ 0.33
HDAC4-209ENST00000487617 RHBDD3Q9Y3P4 386 aa17.09■□□□□ 0.33
HDAC4-209ENST00000487617 INSIG2Q9Y5U4 225 aa17.09■□□□□ 0.33
HDAC4-209ENST00000487617 ARHGAP32A7KAX9 2087 aa17.08■□□□□ 0.33
HDAC4-209ENST00000487617 hCG_1807616A0A1W2PRN6 198 aa17.08■□□□□ 0.32
HDAC4-209ENST00000487617 RGS9O75916 674 aaPredicted RBP17.08■□□□□ 0.32
HDAC4-209ENST00000487617 CD80P33681 288 aa17.08■□□□□ 0.32
HDAC4-209ENST00000487617 PITPNBP48739 271 aa17.08■□□□□ 0.32
HDAC4-209ENST00000487617 SNCBQ16143 134 aa17.08■□□□□ 0.32
HDAC4-209ENST00000487617 SFRP4Q6FHJ7 346 aaPredicted RBP17.08■□□□□ 0.32
HDAC4-209ENST00000487617 LYPD2Q6UXB3 125 aa17.08■□□□□ 0.32
HDAC4-209ENST00000487617 ZNF826PQ6ZT77 177 aa17.08■□□□□ 0.32
HDAC4-209ENST00000487617 OR8B12Q8NGG6 310 aa17.08■□□□□ 0.32
HDAC4-209ENST00000487617 ZNF418Q8TF45 676 aaPredicted RBP17.08■□□□□ 0.32
HDAC4-209ENST00000487617 PYDC1Q8WXC3 89 aa17.08■□□□□ 0.32
HDAC4-209ENST00000487617 ASB17Q8WXJ9 295 aa17.08■□□□□ 0.32
HDAC4-209ENST00000487617 IL4I1Q96RQ9 567 aa17.08■□□□□ 0.32
HDAC4-209ENST00000487617 MRI1Q9BV20 369 aa17.08■□□□□ 0.32
HDAC4-209ENST00000487617 AUP1Q9Y679 476 aa17.08■□□□□ 0.32
HDAC4-209ENST00000487617 TMEM14AQ9Y6G1 99 aa17.08■□□□□ 0.32
HDAC4-209ENST00000487617 WNK2Q9Y3S1 2297 aa17.07■□□□□ 0.32
HDAC4-209ENST00000487617 A0A0A6YYJ9 748 aa17.07■□□□□ 0.32
HDAC4-209ENST00000487617 SAC3D1A6NKF1 404 aa17.07■□□□□ 0.32
HDAC4-209ENST00000487617 C3orf80F5H4A9 247 aa17.07■□□□□ 0.32
HDAC4-209ENST00000487617 LGALS8O00214 317 aa17.07■□□□□ 0.32
HDAC4-209ENST00000487617 EFNB1P98172 346 aa17.07■□□□□ 0.32
HDAC4-209ENST00000487617 OR8B8Q15620 311 aa17.07■□□□□ 0.32
HDAC4-209ENST00000487617 KCNJ8Q15842 424 aa17.07■□□□□ 0.32
HDAC4-209ENST00000487617 AADACL4Q5VUY2 407 aa17.07■□□□□ 0.32
HDAC4-209ENST00000487617 NXNL2Q5VZ03 156 aa17.07■□□□□ 0.32
HDAC4-209ENST00000487617 DEGS2Q6QHC5 323 aa17.07■□□□□ 0.32
HDAC4-209ENST00000487617 FTMTQ8N4E7 242 aa17.07■□□□□ 0.32
HDAC4-209ENST00000487617 LYZL4Q96KX0 146 aa17.07■□□□□ 0.32
HDAC4-209ENST00000487617 MROQ9BYG7 248 aa17.07■□□□□ 0.32
HDAC4-209ENST00000487617 TTTY10Q9BZA0 68 aa17.07■□□□□ 0.32
HDAC4-209ENST00000487617 PPP1R3EQ9H7J1 279 aa17.07■□□□□ 0.32
HDAC4-209ENST00000487617 COPS3Q9UNS2 423 aa17.07■□□□□ 0.32
HDAC4-209ENST00000487617 SLC22A31A6NKX4 558 aa17.06■□□□□ 0.32
HDAC4-209ENST00000487617 VENTXO95231 258 aa17.06■□□□□ 0.32
HDAC4-209ENST00000487617 ARMCX4Q5H9R4 360 aa17.06■□□□□ 0.32
HDAC4-209ENST00000487617 BTNL3Q6UXE8 466 aa17.06■□□□□ 0.32
HDAC4-209ENST00000487617 WDR86Q86TI4 376 aa17.06■□□□□ 0.32
HDAC4-209ENST00000487617 OR8B4Q96RC9 309 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms