RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 DCDC2Q9UHG0 476 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 KIAA2026Q5HYC2 2103 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 PRORSD1PA6NEY8 169 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 CCDC154A6NI56 674 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 BLOC1S5-TXNDC5H3BN57 136 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 IMPA2O14732 288 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 SAP30O75446 220 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 CH25HO95992 272 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 GRPP07492 148 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 FGF4P08620 206 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 IGHV1-8P0DP01 117 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 HOXA4Q00056 320 aaPredicted RBP6.3□□□□□ -1.4
USP54-211ENST00000474929 IFFO1Q0D2I5 559 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 GK2Q14410 553 aaPredicted RBP6.3□□□□□ -1.4
USP54-211ENST00000474929 OR1Q1Q15612 314 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 CCDC153Q494R4 210 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 ZNF613Q6PF04 617 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 TTC33Q6PID6 262 aaPredicted RBP6.3□□□□□ -1.4
USP54-211ENST00000474929 ZNF788Q6ZQV5 615 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 C18orf65Q6ZTR6 163 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 KRT73Q86Y46 540 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 PGAM4Q8N0Y7 254 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 C4orf33Q8N1A6 199 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 DYNAPQ8N1N2 210 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 TCP10LQ8TDR4 215 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 MZB1Q8WU39 189 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 SLC38A5Q8WUX1 472 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 TMEM19Q96HH6 336 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 ZIM3Q96PE6 472 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 RBM14Q96PK6 669 aaKnown RBP6.3□□□□□ -1.4
USP54-211ENST00000474929 COQ7Q99807 217 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 TXNIPQ9H3M7 391 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 OPA3Q9H6K4 179 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 BCL2L10Q9HD36 194 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 HAO2Q9NYQ3 351 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 SLAMF8Q9P0V8 285 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 BOLA1Q9Y3E2 137 aa6.3□□□□□ -1.4
USP54-211ENST00000474929 IGKV1D-43A0A0B4J1Z2 117 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 A0A1B0GVY2 172 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 A6NIZ1 184 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 SERPINE3A8MV23 424 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 E9PBE3 544 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 BHLHE40O14503 412 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 HSPA12AO43301 675 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 SCG5P05408 212 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 KRT4P19013 534 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 FASP25445 335 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 CCT5P48643 541 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 RAP1BP61224 184 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 RAP1AP62834 184 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 RPL31P62899 125 aaKnown RBP6.29□□□□□ -1.4
USP54-211ENST00000474929 EMX2Q04743 252 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 RPL18Q07020 188 aaKnown RBP6.29□□□□□ -1.4
USP54-211ENST00000474929 POU4F2Q12837 409 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 SNAPC1Q16533 368 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 PGM2L1Q6PCE3 622 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 DHRS4L2Q6PKH6 230 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 CEMP1Q6PRD7 247 aaPredicted RBP6.29□□□□□ -1.4
USP54-211ENST00000474929 ZBTB49Q6ZSB9 765 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 ZNF826PQ6ZT77 177 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 ZDHHC23Q8IYP9 409 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 CCDC63Q8NA47 563 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 OR11H6Q8NGC7 330 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 OR8S1Q8NH09 359 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 NDNFQ8TB73 568 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.29□□□□□ -1.4
USP54-211ENST00000474929 HDAC2Q92769 488 aaKnown RBP6.29□□□□□ -1.4
USP54-211ENST00000474929 STMN2Q93045 179 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 KCTD12Q96CX2 325 aaKnown RBP6.29□□□□□ -1.4
USP54-211ENST00000474929 MPP4Q96JB8 637 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 GAFA1Q96PS6 74 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 ZNF391Q9UJN7 358 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 MOB4Q9Y3A3 225 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 HSPE1-MOB4S4R3N1 261 aa6.29□□□□□ -1.4
USP54-211ENST00000474929 DNAH11Q96DT5 4516 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 CD300LBA8K4G0 201 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 C5orf58C9J3I9 102 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 G3V2L1 256 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 COPEO14579 308 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 OVOL1O14753 267 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 SHOXO15266 292 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 SPAG7O75391 227 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 DNAJC8O75937 253 aaPredicted RBP6.28□□□□□ -1.4
USP54-211ENST00000474929 ELANEP08246 267 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 ACAA1P09110 424 aaPredicted RBP6.28□□□□□ -1.4
USP54-211ENST00000474929 CPA3P15088 417 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 FSTP19883 344 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 S100A3P33764 101 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 GPR12P47775 334 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 CDH12P55289 794 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 LSM6P62312 80 aaKnown RBP6.28□□□□□ -1.4
USP54-211ENST00000474929 GABPB1Q06547 395 aaPredicted RBP6.28□□□□□ -1.4
USP54-211ENST00000474929 DYNC1I2Q13409 638 aaKnown RBP6.28□□□□□ -1.4
USP54-211ENST00000474929 LAPTM4AQ15012 233 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 RBMY1FQ15415 496 aaKnown RBP6.28□□□□□ -1.4
USP54-211ENST00000474929 MAPK11Q15759 364 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 DGUOKQ16854 277 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 DEFB136Q30KP8 78 aa6.28□□□□□ -1.4
USP54-211ENST00000474929 RPS26P11Q5JNZ5 115 aaPredicted RBP6.28□□□□□ -1.4
USP54-211ENST00000474929 WDR93Q6P2C0 686 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms