RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 SLC15A1P46059 708 aa15.43■□□□□ 0.06
COL7A1-209ENST00000474432 ZNF121P58317 390 aaPredicted RBP15.43■□□□□ 0.06
COL7A1-209ENST00000474432 PLBD1Q6P4A8 553 aa15.43■□□□□ 0.06
COL7A1-209ENST00000474432 BTNL3Q6UXE8 466 aa15.43■□□□□ 0.06
COL7A1-209ENST00000474432 FAM57BQ71RH2 274 aa15.43■□□□□ 0.06
COL7A1-209ENST00000474432 NLRC3Q7RTR2 1065 aa15.43■□□□□ 0.06
COL7A1-209ENST00000474432 SPERTQ8NA61 448 aa15.43■□□□□ 0.06
COL7A1-209ENST00000474432 ZMYND19Q96E35 227 aaPredicted RBP15.43■□□□□ 0.06
COL7A1-209ENST00000474432 DUX5Q96PT3 197 aa15.43■□□□□ 0.06
COL7A1-209ENST00000474432 OR51V1Q9H2C8 321 aa15.43■□□□□ 0.06
COL7A1-209ENST00000474432 SMURF1Q9HCE7 757 aa15.43■□□□□ 0.06
COL7A1-209ENST00000474432 C3orf80F5H4A9 247 aa15.42■□□□□ 0.06
COL7A1-209ENST00000474432 TBX1O43435 398 aa15.42■□□□□ 0.06
COL7A1-209ENST00000474432 SELENOFO60613 162 aa15.42■□□□□ 0.06
COL7A1-209ENST00000474432 ANXA2P07355 339 aaKnown RBP15.42■□□□□ 0.06
COL7A1-209ENST00000474432 GRPP07492 148 aa15.42■□□□□ 0.06
COL7A1-209ENST00000474432 SLC2A5P22732 501 aa15.42■□□□□ 0.06
COL7A1-209ENST00000474432 POU1F1P28069 291 aa15.42■□□□□ 0.06
COL7A1-209ENST00000474432 AWAT1Q58HT5 328 aa15.42■□□□□ 0.06
COL7A1-209ENST00000474432 SHFQ7M4L6 423 aa15.42■□□□□ 0.06
COL7A1-209ENST00000474432 FAM90A1Q86YD7 464 aa15.42■□□□□ 0.06
COL7A1-209ENST00000474432 CPOQ8IVL8 374 aa15.42■□□□□ 0.06
COL7A1-209ENST00000474432 BOLLQ8N9W6 283 aaKnown RBP15.42■□□□□ 0.06
COL7A1-209ENST00000474432 BBS1Q8NFJ9 593 aa15.42■□□□□ 0.06
COL7A1-209ENST00000474432 OTOSQ8NHW6 89 aa15.42■□□□□ 0.06
COL7A1-209ENST00000474432 OTULINQ96BN8 352 aa15.42■□□□□ 0.06
COL7A1-209ENST00000474432 REEP6Q96HR9 211 aa15.42■□□□□ 0.06
COL7A1-209ENST00000474432 DNAJC27Q9NZQ0 273 aa15.42■□□□□ 0.06
COL7A1-209ENST00000474432 POMPQ9Y244 141 aa15.42■□□□□ 0.06
COL7A1-209ENST00000474432 OOEPA6NGQ2 149 aa15.41■□□□□ 0.06
COL7A1-209ENST00000474432 PRR23D1E9PI22 279 aaPredicted RBP15.41■□□□□ 0.06
COL7A1-209ENST00000474432 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.41■□□□□ 0.06
COL7A1-209ENST00000474432 FKBP6O75344 327 aa15.41■□□□□ 0.06
COL7A1-209ENST00000474432 PRR23D2P0DMB1 279 aaPredicted RBP15.41■□□□□ 0.06
COL7A1-209ENST00000474432 HKR1P10072 659 aa15.41■□□□□ 0.06
COL7A1-209ENST00000474432 GSK3AP49840 483 aa15.41■□□□□ 0.06
COL7A1-209ENST00000474432 FGF12P61328 243 aa15.41■□□□□ 0.06
COL7A1-209ENST00000474432 ELF3P78545 371 aaPredicted RBP15.41■□□□□ 0.06
COL7A1-209ENST00000474432 TMEM236Q5W0B7 351 aa15.41■□□□□ 0.06
COL7A1-209ENST00000474432 RASSF4Q9H2L5 321 aa15.41■□□□□ 0.06
COL7A1-209ENST00000474432 DNAJB9Q9UBS3 223 aa15.41■□□□□ 0.06
COL7A1-209ENST00000474432 TRAV40A0A0B4J280 105 aa15.4■□□□□ 0.06
COL7A1-209ENST00000474432 MDFIC2A0A1B0GVS7 189 aa15.4■□□□□ 0.06
COL7A1-209ENST00000474432 GNGT2O14610 69 aa15.4■□□□□ 0.06
COL7A1-209ENST00000474432 GYG2O15488 501 aa15.4■□□□□ 0.06
COL7A1-209ENST00000474432 MMP9P14780 707 aa15.4■□□□□ 0.06
COL7A1-209ENST00000474432 ACKR3P25106 362 aa15.4■□□□□ 0.06
COL7A1-209ENST00000474432 HSD11B1P28845 292 aa15.4■□□□□ 0.06
COL7A1-209ENST00000474432 CBX1P83916 185 aa15.4■□□□□ 0.06
COL7A1-209ENST00000474432 POU4F2Q12837 409 aa15.4■□□□□ 0.06
COL7A1-209ENST00000474432 FLOT2Q14254 428 aa15.4■□□□□ 0.06
COL7A1-209ENST00000474432 OR8B8Q15620 311 aa15.4■□□□□ 0.06
COL7A1-209ENST00000474432 TIGD6Q17RP2 521 aa15.4■□□□□ 0.06
COL7A1-209ENST00000474432 TEX36Q5VZQ5 186 aa15.4■□□□□ 0.06
COL7A1-209ENST00000474432 RBMS3Q6XE24 437 aaKnown RBP15.4■□□□□ 0.06
COL7A1-209ENST00000474432 OR52H1Q8NGJ2 320 aa15.4■□□□□ 0.06
COL7A1-209ENST00000474432 LYZL4Q96KX0 146 aa15.4■□□□□ 0.06
COL7A1-209ENST00000474432 FGF23Q9GZV9 251 aaPredicted RBP15.4■□□□□ 0.06
COL7A1-209ENST00000474432 MS4A7Q9GZW8 240 aaPredicted RBP15.4■□□□□ 0.06
COL7A1-209ENST00000474432 PRDM13Q9H4Q3 707 aa15.4■□□□□ 0.06
COL7A1-209ENST00000474432 SLC25A19Q9HC21 320 aa15.4■□□□□ 0.06
COL7A1-209ENST00000474432 BRD7Q9NPI1 651 aa15.4■□□□□ 0.06
COL7A1-209ENST00000474432 C14orf119Q9NWQ9 140 aa15.4■□□□□ 0.06
COL7A1-209ENST00000474432 RHBDD3Q9Y3P4 386 aa15.4■□□□□ 0.06
COL7A1-209ENST00000474432 TRAV38-1A0A0B4J264 116 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 A0A1B0GW55 424 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 ANKRD30BLA7E2S9 258 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 CLDN34H7C241 214 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 PRODHO43272 600 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 ADAM20O43506 726 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 APOC1P02654 83 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 GYPAP02724 150 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 HMGN1P05114 100 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 LYNP07948 512 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 H2BFMP0C1H6 154 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 DUX4L2P0CJ85 424 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 DUX4L3P0CJ86 424 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 DUX4L4P0CJ87 422 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 DUX4L5P0CJ88 424 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 DUX4L6P0CJ89 424 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 DUX4L7P0CJ90 424 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 ANXA8P13928 327 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 HOXB6P17509 224 aaKnown RBP15.39■□□□□ 0.05
COL7A1-209ENST00000474432 AMY2BP19961 511 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 PAICSP22234 425 aaKnown RBP15.39■□□□□ 0.05
COL7A1-209ENST00000474432 NPY4RP50391 375 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 HCCSP53701 268 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 CSNK2BP67870 215 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 BAMBIQ13145 260 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 SLC9A3R2Q15599 337 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 DNAL1Q4LDG9 190 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 DUX4L9Q6RFH8 374 aaPredicted RBP15.39■□□□□ 0.05
COL7A1-209ENST00000474432 WDR82Q6UXN9 313 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 SPATA24Q86W54 205 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 FGFRL1Q8N441 504 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 C3orf56Q8N813 242 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 OR1M1Q8NGA1 313 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 BCAS4Q8TDM0 211 aa15.39■□□□□ 0.05
COL7A1-209ENST00000474432 TAF15Q92804 592 aaKnown RBP eCLIP15.39■□□□□ 0.05
COL7A1-209ENST00000474432 ITPKCQ96DU7 683 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms