RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 NIPSNAP1Q9BPW8 284 aa12.03□□□□□ -0.48
NPHP3-ACAD11-201ENST00000471702 C12orf10Q9HB07 376 aa12.03□□□□□ -0.48
NPHP3-ACAD11-201ENST00000471702 LPAR2Q9HBW0 351 aa12.03□□□□□ -0.48
NPHP3-ACAD11-201ENST00000471702 UGT2A1Q9Y4X1 527 aa12.03□□□□□ -0.48
NPHP3-ACAD11-201ENST00000471702 PDGFBP01127 241 aaPredicted RBP12.02□□□□□ -0.48
NPHP3-ACAD11-201ENST00000471702 PDCD1Q15116 288 aa12.02□□□□□ -0.48
NPHP3-ACAD11-201ENST00000471702 TREX1Q9NSU2 369 aa12.02□□□□□ -0.48
NPHP3-ACAD11-201ENST00000471702 CDAP32320 146 aa12.02□□□□□ -0.48
NPHP3-ACAD11-201ENST00000471702 PPP1CCP36873 323 aaKnown RBP12.02□□□□□ -0.48
NPHP3-ACAD11-201ENST00000471702 TIPARPQ7Z3E1 657 aaKnown RBP12.02□□□□□ -0.48
NPHP3-ACAD11-201ENST00000471702 LSRQ86X29 649 aaPredicted RBP12.02□□□□□ -0.48
NPHP3-ACAD11-201ENST00000471702 FBXO34Q9NWN3 711 aa12.02□□□□□ -0.48
NPHP3-ACAD11-201ENST00000471702 ICAM5Q9UMF0 924 aa12.02□□□□□ -0.48
NPHP3-ACAD11-201ENST00000471702 TIMM10BQ9Y5J6 103 aa12.02□□□□□ -0.48
NPHP3-ACAD11-201ENST00000471702 IL5P05113 134 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 OLIG1Q8TAK6 271 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 C2CD4CQ8TF44 421 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 SLAMF6Q96DU3 332 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 TMEM231Q9H6L2 316 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 UBTD1Q9HAC8 227 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 ING1Q9UK53 422 aaPredicted RBP12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 HS3ST2Q9Y278 367 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 SERPINE3A8MV23 424 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 DEFB108AA8MXU0 73 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 TM4SF4P48230 202 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 TOR2AQ5JU69 321 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 NKAIN3Q8N8D7 197 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 SMOC1Q9H4F8 434 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 HTR1FP30939 366 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 ADAMTSL4Q6UY14 1074 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 C15orf39Q6ZRI6 1047 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 SLC25A26Q70HW3 274 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 OR2A1Q8NGT9 310 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 FAM131CQ96AQ9 280 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 RHOFQ9HBH0 211 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 GMPR2Q9P2T1 348 aaKnown RBP12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 KIR2DS1A0A191URI9 304 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 G3V3Q6 166 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 DFFBO76075 338 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 FBP1P09467 338 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 OPRK1P41145 380 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 KIR2DS4P43632 304 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 SLC6A12P48065 614 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 ETV1P50549 477 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 CCL7P80098 99 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 ZNF85Q03923 595 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 KIR2DS1Q14954 304 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 SLC48A1Q6P1K1 146 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 DGAT2L6Q6ZPD8 337 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 GALNT16Q8N428 558 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 GALMQ96C23 342 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 GRAMD2BQ96HH9 432 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 OPALINQ96PE5 141 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 ZIC5Q96T25 663 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 GABARAPL1Q9H0R8 117 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 AMDHD2Q9Y303 409 aa12.02□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 PRSS44E7EML9 344 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 FPR3P25089 353 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 DLX1P56177 255 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 KLRB1Q12918 225 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 SLCO4C1Q6ZQN7 724 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 LSMEM1Q8N8F7 131 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 ATOH8Q96SQ7 321 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 T-ENOLP0DO92 83 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 ST6GAL1P15907 406 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 AKR7LQ8NHP1 331 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 DOCK3Q8IZD9 2030 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 TRGV10A0A0A0MS01 117 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 PLPP1O14494 284 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 ZGLP1P0C6A0 271 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 HIST1H1CP16403 213 aaKnown RBP12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 ZDHHC23Q8IYP9 409 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 OR6K3Q8NGY3 331 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 RALYQ9UKM9 306 aaKnown RBP12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 ZNF346Q9UL40 294 aaKnown RBP12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 HRO43593 1189 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 TSPAN12O95859 305 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 STAG3L2P0CL84 134 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 GFERP55789 205 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 PLK5Q496M5 336 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 PKMYT1Q99640 499 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 SLC25A22Q9H936 323 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 COL1A1P02452 1464 aaPredicted RBP12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 PHRF1Q9P1Y6 1649 aaKnown RBP12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 CLDN24A6NM45 220 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 SHISA8B8ZZ34 492 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 KLKB1P03952 638 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 KRTDAPP60985 99 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 OR6M1Q8NGM8 313 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 ASB16Q96NS5 453 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 DNAJC25-GNG10A0A024R161 153 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 IGKV6-21A0A0C4DH24 114 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 C3orf80F5H4A9 247 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 CR2P20023 1033 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 FGF7P21781 194 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 OR3A1P47881 315 aa12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 HINT1P49773 126 aaPredicted RBP12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 RPL30P62888 115 aaKnown RBP12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 MRPL13Q9BYD1 178 aaKnown RBP12.01□□□□□ -0.49
NPHP3-ACAD11-201ENST00000471702 TNCP24821 2201 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms