RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 C14orf119Q9NWQ9 140 aa16.18■□□□□ 0.18
USP40-207ENST00000450940 N6AMT1Q9Y5N5 214 aa16.18■□□□□ 0.18
USP40-207ENST00000450940 IGHV2-70DA0A0C4DH43 119 aa16.17■□□□□ 0.18
USP40-207ENST00000450940 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP16.17■□□□□ 0.18
USP40-207ENST00000450940 hCG_38984A0A1B0GV85 526 aa16.17■□□□□ 0.18
USP40-207ENST00000450940 LGALS8O00214 317 aa16.17■□□□□ 0.18
USP40-207ENST00000450940 PHYHO14832 338 aa16.17■□□□□ 0.18
USP40-207ENST00000450940 TBX1O43435 398 aa16.17■□□□□ 0.18
USP40-207ENST00000450940 LHBP01229 141 aa16.17■□□□□ 0.18
USP40-207ENST00000450940 ANXA2P07355 339 aaKnown RBP16.17■□□□□ 0.18
USP40-207ENST00000450940 LYNP07948 512 aa16.17■□□□□ 0.18
USP40-207ENST00000450940 TIGD6Q17RP2 521 aa16.17■□□□□ 0.18
USP40-207ENST00000450940 KLHL12Q53G59 568 aa16.17■□□□□ 0.18
USP40-207ENST00000450940 ARMCX4Q5H9R4 360 aa16.17■□□□□ 0.18
USP40-207ENST00000450940 WDR25Q64LD2 544 aaPredicted RBP16.17■□□□□ 0.18
USP40-207ENST00000450940 FAM57BQ71RH2 274 aa16.17■□□□□ 0.18
USP40-207ENST00000450940 PARP8Q8N3A8 854 aa16.17■□□□□ 0.18
USP40-207ENST00000450940 ZDHHC22Q8N966 263 aa16.17■□□□□ 0.18
USP40-207ENST00000450940 RGCCQ9H4X1 137 aa16.17■□□□□ 0.18
USP40-207ENST00000450940 ESM1Q9NQ30 184 aa16.17■□□□□ 0.18
USP40-207ENST00000450940 ANKRD30BLA7E2S9 258 aa16.16■□□□□ 0.18
USP40-207ENST00000450940 SELENOFO60613 162 aa16.16■□□□□ 0.18
USP40-207ENST00000450940 H2BFMP0C1H6 154 aa16.16■□□□□ 0.18
USP40-207ENST00000450940 ALOX5APP20292 161 aa16.16■□□□□ 0.18
USP40-207ENST00000450940 COMPP49747 757 aaPredicted RBP16.16■□□□□ 0.18
USP40-207ENST00000450940 GSK3AP49840 483 aa16.16■□□□□ 0.18
USP40-207ENST00000450940 CRISP1P54107 249 aa16.16■□□□□ 0.18
USP40-207ENST00000450940 KCNJ8Q15842 424 aa16.16■□□□□ 0.18
USP40-207ENST00000450940 TMEM236Q5W0B7 351 aa16.16■□□□□ 0.18
USP40-207ENST00000450940 BTNL3Q6UXE8 466 aa16.16■□□□□ 0.18
USP40-207ENST00000450940 DOK3Q7L591 496 aa16.16■□□□□ 0.18
USP40-207ENST00000450940 C19orf18Q8NEA5 215 aa16.16■□□□□ 0.18
USP40-207ENST00000450940 BBS1Q8NFJ9 593 aa16.16■□□□□ 0.18
USP40-207ENST00000450940 UPRTQ96BW1 309 aa16.16■□□□□ 0.18
USP40-207ENST00000450940 TEX12Q9BXU0 123 aa16.16■□□□□ 0.18
USP40-207ENST00000450940 OR10A2Q9H208 303 aa16.16■□□□□ 0.18
USP40-207ENST00000450940 NIPAL2Q9H841 368 aa16.16■□□□□ 0.18
USP40-207ENST00000450940 TRIM36Q9NQ86 728 aa16.16■□□□□ 0.18
USP40-207ENST00000450940 PAPOLBQ9NRJ5 636 aaKnown RBP16.16■□□□□ 0.18
USP40-207ENST00000450940 C1orf123Q9NWV4 160 aa16.16■□□□□ 0.18
USP40-207ENST00000450940 CLN8Q9UBY8 286 aa16.16■□□□□ 0.18
USP40-207ENST00000450940 ZNF69Q9UC07 566 aa16.16■□□□□ 0.18
USP40-207ENST00000450940 TMEM89A2RUT3 159 aa16.15■□□□□ 0.18
USP40-207ENST00000450940 NDUFA2O43678 99 aa16.15■□□□□ 0.18
USP40-207ENST00000450940 TIPRLO75663 272 aa16.15■□□□□ 0.18
USP40-207ENST00000450940 NPY4RP50391 375 aa16.15■□□□□ 0.18
USP40-207ENST00000450940 DAPP51397 102 aa16.15■□□□□ 0.18
USP40-207ENST00000450940 HOXA4Q00056 320 aaPredicted RBP16.15■□□□□ 0.18
USP40-207ENST00000450940 OR8B8Q15620 311 aa16.15■□□□□ 0.18
USP40-207ENST00000450940 C9orf139Q6ZV77 190 aa16.15■□□□□ 0.18
USP40-207ENST00000450940 WDR86Q86TI4 376 aa16.15■□□□□ 0.18
USP40-207ENST00000450940 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.15■□□□□ 0.18
USP40-207ENST00000450940 C11orf53Q8IXP5 236 aa16.15■□□□□ 0.18
USP40-207ENST00000450940 GCSAMQ8N6F7 178 aa16.15■□□□□ 0.18
USP40-207ENST00000450940 CSNK2A3Q8NEV1 391 aa16.15■□□□□ 0.18
USP40-207ENST00000450940 THEM6Q8WUY1 208 aa16.15■□□□□ 0.18
USP40-207ENST00000450940 C22orf15Q8WYQ4 148 aa16.15■□□□□ 0.18
USP40-207ENST00000450940 DNAJC27Q9NZQ0 273 aa16.15■□□□□ 0.18
USP40-207ENST00000450940 KLHDC2Q9Y2U9 406 aa16.15■□□□□ 0.18
USP40-207ENST00000450940 TRAV38-1A0A0B4J264 116 aa16.14■□□□□ 0.17
USP40-207ENST00000450940 GRPP07492 148 aa16.14■□□□□ 0.17
USP40-207ENST00000450940 SNCBQ16143 134 aa16.14■□□□□ 0.17
USP40-207ENST00000450940 TEX36Q5VZQ5 186 aa16.14■□□□□ 0.17
USP40-207ENST00000450940 ZNF826PQ6ZT77 177 aa16.14■□□□□ 0.17
USP40-207ENST00000450940 OR5K1Q8NHB7 308 aa16.14■□□□□ 0.17
USP40-207ENST00000450940 DUS3LQ96G46 650 aaKnown RBP16.14■□□□□ 0.17
USP40-207ENST00000450940 PGAM5Q96HS1 289 aa16.14■□□□□ 0.17
USP40-207ENST00000450940 TEAD3Q99594 435 aa16.14■□□□□ 0.17
USP40-207ENST00000450940 YIPF3Q9GZM5 350 aa16.14■□□□□ 0.17
USP40-207ENST00000450940 MMADHCQ9H3L0 296 aaPredicted RBP16.14■□□□□ 0.17
USP40-207ENST00000450940 RNPEPL1Q9HAU8 725 aa16.14■□□□□ 0.17
USP40-207ENST00000450940 CTSZQ9UBR2 303 aa16.14■□□□□ 0.17
USP40-207ENST00000450940 OOEPA6NGQ2 149 aa16.13■□□□□ 0.17
USP40-207ENST00000450940 ATP5HO75947 161 aa16.13■□□□□ 0.17
USP40-207ENST00000450940 PLATP00750 562 aa16.13■□□□□ 0.17
USP40-207ENST00000450940 CFHR2P36980 270 aa16.13■□□□□ 0.17
USP40-207ENST00000450940 NAA10P41227 235 aaPredicted RBP16.13■□□□□ 0.17
USP40-207ENST00000450940 RASSF2P50749 326 aa16.13■□□□□ 0.17
USP40-207ENST00000450940 PSMA6P60900 246 aaKnown RBP16.13■□□□□ 0.17
USP40-207ENST00000450940 ESRRGP62508 458 aa16.13■□□□□ 0.17
USP40-207ENST00000450940 EFNB1P98172 346 aa16.13■□□□□ 0.17
USP40-207ENST00000450940 APOFQ13790 326 aa16.13■□□□□ 0.17
USP40-207ENST00000450940 PTGES3Q15185 160 aaKnown RBP16.13■□□□□ 0.17
USP40-207ENST00000450940 ATP6AP1Q15904 470 aa16.13■□□□□ 0.17
USP40-207ENST00000450940 SNAPC1Q16533 368 aa16.13■□□□□ 0.17
USP40-207ENST00000450940 SFRP4Q6FHJ7 346 aaPredicted RBP16.13■□□□□ 0.17
USP40-207ENST00000450940 DEGS2Q6QHC5 323 aa16.13■□□□□ 0.17
USP40-207ENST00000450940 KRT74Q7RTS7 529 aa16.13■□□□□ 0.17
USP40-207ENST00000450940 SIGLECL1Q8N7X8 197 aa16.13■□□□□ 0.17
USP40-207ENST00000450940 OR1M1Q8NGA1 313 aa16.13■□□□□ 0.17
USP40-207ENST00000450940 OR8S1Q8NH09 359 aa16.13■□□□□ 0.17
USP40-207ENST00000450940 ITFG2Q969R8 447 aa16.13■□□□□ 0.17
USP40-207ENST00000450940 NUDT16L1Q9BRJ7 211 aaKnown RBP16.13■□□□□ 0.17
USP40-207ENST00000450940 TLNRD1Q9H1K6 362 aa16.13■□□□□ 0.17
USP40-207ENST00000450940 BRD7Q9NPI1 651 aa16.13■□□□□ 0.17
USP40-207ENST00000450940 TVP23BQ9NYZ1 205 aa16.13■□□□□ 0.17
USP40-207ENST00000450940 ZNF391Q9UJN7 358 aa16.13■□□□□ 0.17
USP40-207ENST00000450940 RHBDD3Q9Y3P4 386 aa16.13■□□□□ 0.17
USP40-207ENST00000450940 CCDC182A6NF36 153 aa16.12■□□□□ 0.17
USP40-207ENST00000450940 ACOD1A6NK06 481 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms