RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 CST11Q9H112 138 aa11.76□□□□□ -0.53
CCDC3-202ENST00000378839 SLCO5A1Q9H2Y9 848 aa11.76□□□□□ -0.53
CCDC3-202ENST00000378839 METTL21EPA6NDL7 271 aa11.76□□□□□ -0.53
CCDC3-202ENST00000378839 RFPL3SP0C7P2 107 aa11.76□□□□□ -0.53
CCDC3-202ENST00000378839 CASRP41180 1078 aa11.76□□□□□ -0.53
CCDC3-202ENST00000378839 AP2S1P53680 142 aaPredicted RBP11.76□□□□□ -0.53
CCDC3-202ENST00000378839 EXT1Q16394 746 aa11.76□□□□□ -0.53
CCDC3-202ENST00000378839 RHOUQ7L0Q8 258 aa11.76□□□□□ -0.53
CCDC3-202ENST00000378839 OR5D18Q8NGL1 313 aa11.76□□□□□ -0.53
CCDC3-202ENST00000378839 NPRL2Q8WTW4 380 aa11.76□□□□□ -0.53
CCDC3-202ENST00000378839 FBXO17Q96EF6 278 aa11.76□□□□□ -0.53
CCDC3-202ENST00000378839 SLC25A21Q9BQT8 299 aaPredicted RBP11.76□□□□□ -0.53
CCDC3-202ENST00000378839 SLC39A1Q9NY26 324 aa11.76□□□□□ -0.53
CCDC3-202ENST00000378839 FBLN5Q9UBX5 448 aa11.76□□□□□ -0.53
CCDC3-202ENST00000378839 MRPS28Q9Y2Q9 187 aaKnown RBP11.76□□□□□ -0.53
CCDC3-202ENST00000378839 CDC14BO60729 498 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 PMP2P02689 132 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 DSCR4P56555 118 aaPredicted RBP11.75□□□□□ -0.53
CCDC3-202ENST00000378839 PRSS12P56730 875 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 PPP1R32Q7Z5V6 425 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 C12orf45Q8N5I9 185 aaPredicted RBP11.75□□□□□ -0.53
CCDC3-202ENST00000378839 FOXD3Q9UJU5 478 aaPredicted RBP11.75□□□□□ -0.53
CCDC3-202ENST00000378839 NSG1A0A0A6YYJ2 146 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 F5H5K5 113 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 TRIM77I1YAP6 450 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 CSNK1A1P48729 337 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 PPP1R1AQ13522 171 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 UBE2V2Q15819 145 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 C10orf128Q5T292 105 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 C3P1Q6ZMU1 363 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 TIPARPQ7Z3E1 657 aaKnown RBP11.75□□□□□ -0.53
CCDC3-202ENST00000378839 YRDCQ86U90 279 aaKnown RBP11.75□□□□□ -0.53
CCDC3-202ENST00000378839 ZNF101Q8IZC7 436 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 STEAP2Q8NFT2 490 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 MARC2Q969Z3 335 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 MOB1AQ9H8S9 216 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 ZDBF2Q9HCK1 2354 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 A0A087WZY1 265 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 HMSDA8MTL9 139 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 LAMTOR5O43504 91 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 MPIG6BO95866 241 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 CTRB1P17538 263 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 ZBTB25P24278 435 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 ZNF133P52736 654 aaPredicted RBP11.75□□□□□ -0.53
CCDC3-202ENST00000378839 CTRB2Q6GPI1 263 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 RAB12Q6IQ22 244 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 ALKAL2Q6UX46 152 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 FOXL2NBQ6ZUU3 175 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 CXorf58Q96LI9 332 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 GSX2Q9BZM3 304 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 MYOZ1Q9NP98 299 aaPredicted RBP11.75□□□□□ -0.53
CCDC3-202ENST00000378839 SLC2A8Q9NY64 477 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 MAB21L2Q9Y586 359 aa11.75□□□□□ -0.53
CCDC3-202ENST00000378839 ASPMQ8IZT6 3477 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 F10P00742 488 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 MSR1P21757 451 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 CTSSP25774 331 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 S100A11P31949 105 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 HGFACQ04756 655 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 MPPED2Q15777 294 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 SNAI3Q3KNW1 292 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 TMEM156Q8N614 296 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 BOLLQ8N9W6 283 aaKnown RBP11.74□□□□□ -0.53
CCDC3-202ENST00000378839 ST8SIA4Q92187 359 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 LINC00052Q96N35 136 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 MICU1Q9BPX6 476 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 IER2Q9BTL4 223 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 RBM24Q9BX46 236 aaKnown RBP11.74□□□□□ -0.53
CCDC3-202ENST00000378839 NELFAQ9H3P2 528 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 ZNF107Q9UII5 783 aaPredicted RBP11.74□□□□□ -0.53
CCDC3-202ENST00000378839 DKKL1Q9UK85 242 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 KIAA1549Q9HCM3 1950 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 PINLYPA6NC86 204 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 C9J4A7 227 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 RRASP10301 218 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 CLDN15P56746 228 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 LSM6P62312 80 aaKnown RBP11.74□□□□□ -0.53
CCDC3-202ENST00000378839 HIST1H3AP68431 136 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 TRA2AQ13595 282 aaKnown RBP eCLIP11.74□□□□□ -0.53
CCDC3-202ENST00000378839 AANATQ16613 207 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 RNASE10Q5GAN6 216 aaKnown RBP11.74□□□□□ -0.53
CCDC3-202ENST00000378839 HIST2H3PS2Q5TEC6 136 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 C11orf88Q6PI97 169 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 HIST2H3AQ71DI3 136 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 SLC25A42Q86VD7 318 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 SEC22AQ96IW7 307 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 REG4Q9BYZ8 158 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 WDR13Q9H1Z4 485 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 DEPPQ9NTK1 212 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 HPF1Q9NWY4 346 aa11.74□□□□□ -0.53
CCDC3-202ENST00000378839 YKT6O15498 198 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 HLA-AP01891 365 aaKnown RBP11.73□□□□□ -0.53
CCDC3-202ENST00000378839 FAHP16930 419 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 STARP49675 285 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 SUCLG1P53597 346 aaKnown RBP11.73□□□□□ -0.53
CCDC3-202ENST00000378839 RAB14P61106 215 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 ZXDAP98168 799 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 MICBQ29980 383 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 GGNQ86UU5 652 aa11.73□□□□□ -0.53
CCDC3-202ENST00000378839 C1orf210Q8IVY1 113 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 96.9 ms