RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 TRAPPC1Q9Y5R8 145 aa11.33□□□□□ -0.6
VPS13A-204ENST00000376634 ADPRHP54922 357 aa11.33□□□□□ -0.6
VPS13A-204ENST00000376634 ST8SIA1Q92185 356 aa11.33□□□□□ -0.6
VPS13A-204ENST00000376634 SLC22A20A6NK97 555 aa11.33□□□□□ -0.6
VPS13A-204ENST00000376634 ZNF646O15015 1829 aaPredicted RBP11.33□□□□□ -0.6
VPS13A-204ENST00000376634 RPL12P30050 165 aaKnown RBP11.33□□□□□ -0.6
VPS13A-204ENST00000376634 RPS19BP1Q86WX3 136 aaKnown RBP11.33□□□□□ -0.6
VPS13A-204ENST00000376634 LYSMD2Q8IV50 215 aa11.33□□□□□ -0.6
VPS13A-204ENST00000376634 SLC16A11Q8NCK7 471 aa11.33□□□□□ -0.6
VPS13A-204ENST00000376634 LRP3O75074 770 aa11.33□□□□□ -0.6
VPS13A-204ENST00000376634 VEGFBP49765 207 aa11.33□□□□□ -0.6
VPS13A-204ENST00000376634 MFSD4AQ8N468 514 aa11.33□□□□□ -0.6
VPS13A-204ENST00000376634 RDH5Q92781 318 aa11.33□□□□□ -0.6
VPS13A-204ENST00000376634 GNG4P50150 75 aa11.33□□□□□ -0.6
VPS13A-204ENST00000376634 METRNLQ641Q3 311 aa11.33□□□□□ -0.6
VPS13A-204ENST00000376634 DHRS7BQ6IAN0 325 aaPredicted RBP11.33□□□□□ -0.6
VPS13A-204ENST00000376634 RHOUQ7L0Q8 258 aa11.33□□□□□ -0.6
VPS13A-204ENST00000376634 CXorf58Q96LI9 332 aa11.33□□□□□ -0.6
VPS13A-204ENST00000376634 NIPSNAP1Q9BPW8 284 aa11.33□□□□□ -0.6
VPS13A-204ENST00000376634 NRSN2Q9GZP1 204 aa11.33□□□□□ -0.6
VPS13A-204ENST00000376634 NAA50Q9GZZ1 169 aaKnown RBP11.33□□□□□ -0.6
VPS13A-204ENST00000376634 AQP8O94778 261 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 CRYAAP02489 173 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 PCBP4P57723 403 aaKnown RBP11.32□□□□□ -0.6
VPS13A-204ENST00000376634 DUSP2Q05923 314 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 ABHD17CQ6PCB6 329 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 LOC285556D6RIA3 1793 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 KIAA1551Q9HCM1 1747 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 NHLH1Q02575 133 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 NHLH2Q02577 135 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 CTU2Q2VPK5 515 aaKnown RBP11.32□□□□□ -0.6
VPS13A-204ENST00000376634 BCDIN3DQ7Z5W3 292 aaKnown RBP11.32□□□□□ -0.6
VPS13A-204ENST00000376634 OR52I2Q8NH67 350 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 Q96M85 177 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 SELENBP1Q13228 472 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 OTUD1Q5VV17 481 aaPredicted RBP11.32□□□□□ -0.6
VPS13A-204ENST00000376634 RNASEKQ6P5S7 137 aaKnown RBP11.32□□□□□ -0.6
VPS13A-204ENST00000376634 PRSS45Q7RTY3 260 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 KISS1RQ969F8 398 aaPredicted RBP11.32□□□□□ -0.6
VPS13A-204ENST00000376634 IGHV3-64DA0A0J9YX35 117 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 HSPB2A8KAH6 182 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 RNASEK-C17orf49H0YIS7 233 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 SLC25A4P12235 298 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 ZNF17P17021 662 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 OPRM1P35372 400 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 JAG1P78504 1218 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 DHODHQ02127 395 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 HSPB2Q16082 182 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 TEX261Q6UWH6 196 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 U3KQ87 197 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 TMEM265A0A087WTH1 108 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 BMPR1BO00238 502 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 HAAOP46952 286 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 Q56UQ5 140 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 ANKRD34CP0C6C1 535 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 PSMB2P49721 201 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 PTRH1Q86Y79 214 aaKnown RBP11.32□□□□□ -0.6
VPS13A-204ENST00000376634 OR5D13Q8NGL4 314 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 SLC37A2Q8TED4 501 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 TMED6Q8WW62 240 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 TMEM208Q9BTX3 173 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 NRXN3Q9Y4C0 1643 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 ICOSLGO75144 302 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 PCSK6P29122 969 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 SULT1A2P50226 295 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 TRMT61AQ96FX7 289 aaKnown RBP11.32□□□□□ -0.6
VPS13A-204ENST00000376634 PCED1AQ9H1Q7 454 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 USP3Q9Y6I4 520 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 NRG2O14511 850 aaPredicted RBP11.32□□□□□ -0.6
VPS13A-204ENST00000376634 PMCHP20382 165 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 TRMT12Q53H54 448 aaKnown RBP11.32□□□□□ -0.6
VPS13A-204ENST00000376634 UBE3DQ7Z6J8 389 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 ACY3Q96HD9 319 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 CSNK1G1Q9HCP0 422 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 CHST2Q9Y4C5 530 aa11.32□□□□□ -0.6
VPS13A-204ENST00000376634 GATCO43716 136 aaKnown RBP11.31□□□□□ -0.6
VPS13A-204ENST00000376634 ZNF768Q9H5H4 540 aaKnown RBP11.31□□□□□ -0.6
VPS13A-204ENST00000376634 DUSP5Q16690 384 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 FDX2Q6P4F2 183 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 WBP2Q969T9 261 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 ORM1P02763 201 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 CD1EP15812 388 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 PXDC1Q5TGL8 231 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 CAMKMTQ7Z624 323 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 TMEM147Q9BVK8 224 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 DEFB127Q9H1M4 99 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 ST3GAL6Q9Y274 331 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 EPHA2P29317 976 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 TMEM81Q6P7N7 255 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 PTDSS2Q9BVG9 487 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 SAXO2Q658L1 398 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 ZBTB44Q8NCP5 570 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 GSX2Q9BZM3 304 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 ZNF629Q9UEG4 869 aaPredicted RBP11.31□□□□□ -0.6
VPS13A-204ENST00000376634 IDSB3KWA1 339 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 PLPP1O14494 284 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 PFN3P60673 137 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 ZNF816Q0VGE8 651 aaPredicted RBP11.31□□□□□ -0.6
VPS13A-204ENST00000376634 GUK1Q16774 197 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms