RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 RTL6Q6ICC9 239 aa11.97□□□□□ -0.49
PTPRF-202ENST00000372405 GLCCI1Q86VQ1 547 aa11.97□□□□□ -0.49
PTPRF-202ENST00000372405 PAQR4Q8N4S7 273 aaPredicted RBP11.97□□□□□ -0.49
PTPRF-202ENST00000372405 ZNF75AQ96N20 296 aa11.97□□□□□ -0.49
PTPRF-202ENST00000372405 CHST5Q9GZS9 411 aa11.97□□□□□ -0.49
PTPRF-202ENST00000372405 MEIOCA2RUB1 952 aa11.96□□□□□ -0.49
PTPRF-202ENST00000372405 GGT3PA6NGU5 568 aa11.96□□□□□ -0.49
PTPRF-202ENST00000372405 PFDN1O60925 122 aa11.96□□□□□ -0.49
PTPRF-202ENST00000372405 ERCC1P07992 297 aaPredicted RBP11.96□□□□□ -0.49
PTPRF-202ENST00000372405 COX5BP10606 129 aa11.96□□□□□ -0.49
PTPRF-202ENST00000372405 GABRA1P14867 456 aa11.96□□□□□ -0.49
PTPRF-202ENST00000372405 HOXD11P31277 338 aaPredicted RBP11.96□□□□□ -0.49
PTPRF-202ENST00000372405 MAP2K3P46734 347 aa11.96□□□□□ -0.49
PTPRF-202ENST00000372405 UNC119Q13432 240 aa11.96□□□□□ -0.49
PTPRF-202ENST00000372405 TBRG1Q3YBR2 411 aa11.96□□□□□ -0.49
PTPRF-202ENST00000372405 ZNF324BQ6AW86 544 aaPredicted RBP11.96□□□□□ -0.49
PTPRF-202ENST00000372405 CNEP1R1Q8N9A8 125 aa11.96□□□□□ -0.49
PTPRF-202ENST00000372405 Q8NA96 180 aa11.96□□□□□ -0.49
PTPRF-202ENST00000372405 DRAXINQ8NBI3 349 aaPredicted RBP11.96□□□□□ -0.49
PTPRF-202ENST00000372405 OR52I2Q8NH67 350 aa11.96□□□□□ -0.49
PTPRF-202ENST00000372405 POM121L2Q96KW2 1035 aa11.96□□□□□ -0.49
PTPRF-202ENST00000372405 C1orf147Q96MC9 270 aaPredicted RBP11.96□□□□□ -0.49
PTPRF-202ENST00000372405 MMP28Q9H239 520 aa11.96□□□□□ -0.49
PTPRF-202ENST00000372405 hCG_38984A0A1B0GV85 526 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 C5orf49A4QMS7 147 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 DHRS7CA6NNS2 312 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 MTRF1O75570 445 aaKnown RBP11.96□□□□□ -0.5
PTPRF-202ENST00000372405 TNFSF13O75888 250 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 TOXO94900 526 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 CRYABP02511 175 aaKnown RBP11.96□□□□□ -0.5
PTPRF-202ENST00000372405 ALDOBP05062 364 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 PRF1P14222 555 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 STOMP27105 288 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 ARR3P36575 388 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 OR3A4PP47883 348 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 FAM3AP98173 230 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 GPR176Q14439 515 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 DNM1P46Q6ZS02 220 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 UTS2BQ765I0 119 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 CCDC54Q8NEL0 328 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 SEMA6DQ8NFY4 1073 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 NPRL2Q8WTW4 380 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 SNRNP27Q8WVK2 155 aaKnown RBP11.96□□□□□ -0.5
PTPRF-202ENST00000372405 PP6455Q8WZ26 134 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 SPSB4Q96A44 273 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 C10orf35Q96D05 121 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 MS4A3Q96HJ5 214 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 GAL3ST1Q99999 423 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 ZNF71Q9NQZ8 489 aaPredicted RBP11.96□□□□□ -0.5
PTPRF-202ENST00000372405 RBFOX1Q9NWB1 397 aaKnown RBP11.96□□□□□ -0.5
PTPRF-202ENST00000372405 RABL2AQ9UBK7 228 aaPredicted RBP11.96□□□□□ -0.5
PTPRF-202ENST00000372405 RABL2BQ9UNT1 228 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 RAXQ9Y2V3 346 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 FAM215AQ9Y5M1 114 aa11.96□□□□□ -0.5
PTPRF-202ENST00000372405 MBD3L4A6NDZ8 208 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-202ENST00000372405 MBD3L3A6NE82 208 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-202ENST00000372405 MBD3L5A6NJ08 208 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-202ENST00000372405 ZZEF1O43149 2961 aa11.95□□□□□ -0.5
PTPRF-202ENST00000372405 RRP8O43159 456 aaKnown RBP11.95□□□□□ -0.5
PTPRF-202ENST00000372405 ORC5O43913 435 aa11.95□□□□□ -0.5
PTPRF-202ENST00000372405 HCKP08631 526 aa11.95□□□□□ -0.5
PTPRF-202ENST00000372405 VSIG8P0DPA2 414 aa11.95□□□□□ -0.5
PTPRF-202ENST00000372405 BTCP35070 178 aa11.95□□□□□ -0.5
PTPRF-202ENST00000372405 INPP1P49441 399 aa11.95□□□□□ -0.5
PTPRF-202ENST00000372405 MOGAT2Q3SYC2 334 aa11.95□□□□□ -0.5
PTPRF-202ENST00000372405 Q6ZT83 130 aa11.95□□□□□ -0.5
PTPRF-202ENST00000372405 MDP1Q86V88 176 aa11.95□□□□□ -0.5
PTPRF-202ENST00000372405 ANGPTL5Q86XS5 388 aa11.95□□□□□ -0.5
PTPRF-202ENST00000372405 RPRMLQ8N4K4 120 aa11.95□□□□□ -0.5
PTPRF-202ENST00000372405 MBD3L2Q8NHZ7 208 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-202ENST00000372405 ZC3HAV1LQ96H79 300 aaKnown RBP11.95□□□□□ -0.5
PTPRF-202ENST00000372405 ATG5Q9H1Y0 275 aa11.95□□□□□ -0.5
PTPRF-202ENST00000372405 KLK11Q9UBX7 282 aa11.95□□□□□ -0.5
PTPRF-202ENST00000372405 RBMX2Q9Y388 322 aaKnown RBP11.95□□□□□ -0.5
PTPRF-202ENST00000372405 PIEZO1Q92508 2521 aa11.95□□□□□ -0.5
PTPRF-202ENST00000372405 WIPF3A6NGB9 483 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 GABARAPH6UMI1 98 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 RAD51DO75771 328 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 LYZL6O75951 148 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 ALX3O95076 343 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 BPNT1O95861 308 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 CCNOP22674 350 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 GDNFP39905 211 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 GSK3AP49840 483 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 PMPCAQ10713 525 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 KLF9Q13886 244 aaPredicted RBP11.94□□□□□ -0.5
PTPRF-202ENST00000372405 OR8B8Q15620 311 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 TSC22D1Q15714 1073 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 GSG1Q2KHT4 349 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 OR2A2Q6IF42 318 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 TMEM53Q6P2H8 277 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 KRT74Q7RTS7 529 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 CDH26Q8IXH8 852 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 OR6K3Q8NGY3 331 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 PTX4Q96A99 478 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 NEURL2Q9BR09 285 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 RGCCQ9H4X1 137 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 PRR14LQ5THK1 2151 aa11.94□□□□□ -0.5
PTPRF-202ENST00000372405 TLN1Q9Y490 2541 aaKnown RBP11.94□□□□□ -0.5
PTPRF-202ENST00000372405 TRAV18A0A075B6X5 111 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms