RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 PIGMQ9H3S5 423 aa7.96□□□□□ -1.13
USP4-202ENST00000351842 SNTG1Q9NSN8 517 aa7.96□□□□□ -1.13
USP4-202ENST00000351842 ANKRD34BA5PLL1 514 aa7.96□□□□□ -1.14
USP4-202ENST00000351842 ZNF205O95201 554 aa7.96□□□□□ -1.14
USP4-202ENST00000351842 TTRP02766 147 aa7.96□□□□□ -1.14
USP4-202ENST00000351842 ACSM4P0C7M7 580 aa7.96□□□□□ -1.14
USP4-202ENST00000351842 CLDN12P56749 244 aa7.96□□□□□ -1.14
USP4-202ENST00000351842 ACSM3Q53FZ2 586 aa7.96□□□□□ -1.14
USP4-202ENST00000351842 TIMM23BQ5SRD1 257 aa7.96□□□□□ -1.14
USP4-202ENST00000351842 GLYATL3Q5SZD4 288 aa7.96□□□□□ -1.14
USP4-202ENST00000351842 BOLLQ8N9W6 283 aaKnown RBP7.96□□□□□ -1.14
USP4-202ENST00000351842 PLPP7Q8NBV4 271 aa7.96□□□□□ -1.14
USP4-202ENST00000351842 PPIL3Q9H2H8 161 aaKnown RBP7.96□□□□□ -1.14
USP4-202ENST00000351842 PIGLQ9Y2B2 252 aa7.96□□□□□ -1.14
USP4-202ENST00000351842 R4GMQ9 66 aa7.96□□□□□ -1.14
USP4-202ENST00000351842 DSCAMO60469 2012 aa7.96□□□□□ -1.14
USP4-202ENST00000351842 FAM230AA0A1W2PPH8 454 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 TMEM129A0AVI4 362 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 OR6C6A6NF89 314 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 DPRXA6NFQ7 191 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 CLEC2LP0C7M8 214 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 PSMA6P60900 246 aaKnown RBP7.95□□□□□ -1.14
USP4-202ENST00000351842 CTAG1AP78358 180 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 NAAAQ02083 359 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 EGR3Q06889 387 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 IRF3Q14653 427 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 CARTPTQ16568 116 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 TMEM108Q6UXF1 575 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 ZNF367Q7RTV3 350 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 OR56B2PQ8NGI1 322 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 GTF3AQ92664 365 aaKnown RBP7.95□□□□□ -1.14
USP4-202ENST00000351842 GPR173Q9NS66 373 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 UFSP2Q9NUQ7 469 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 ING3Q9NXR8 418 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 DHDHQ9UQ10 334 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 AK6Q9Y3D8 172 aaKnown RBP7.95□□□□□ -1.14
USP4-202ENST00000351842 TIMM8AO60220 97 aaPredicted RBP7.95□□□□□ -1.14
USP4-202ENST00000351842 GPX5O75715 221 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 PLA2G2AP14555 144 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 ZNF20P17024 532 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 CD40P25942 277 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 CD40LGP29965 261 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 RCVRNP35243 200 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 MPV17P39210 176 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 SERPINB10P48595 397 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 IFITM3Q01628 133 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 SRSF1Q07955 248 aaKnown RBP eCLIP7.95□□□□□ -1.14
USP4-202ENST00000351842 SLC25A35Q3KQZ1 300 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 JAGN1Q8N5M9 183 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 OR51A2Q8NGJ7 313 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 OR52N1Q8NH53 320 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 CMBLQ96DG6 245 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 POM121L2Q96KW2 1035 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 NOX4Q9NPH5 578 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 DDX28Q9NUL7 540 aaKnown RBP7.95□□□□□ -1.14
USP4-202ENST00000351842 LSM2Q9Y333 95 aaKnown RBP7.95□□□□□ -1.14
USP4-202ENST00000351842 ARFGEF3Q5TH69 2177 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 A0A0B4J203 849 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 IGHV2OR16-5A0A0B4J2B6 119 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 LINC00854A0A1B0GVQ3 168 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 J3QRK9 145 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 PHYHO14832 338 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 PEX14O75381 377 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 LY6HO94772 140 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 ZNF14P17017 642 aaPredicted RBP7.95□□□□□ -1.14
USP4-202ENST00000351842 CA6P23280 308 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 ETV6P41212 452 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 PPP1CBP62140 327 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 GRB2P62993 217 aaKnown RBP7.95□□□□□ -1.14
USP4-202ENST00000351842 GK2Q14410 553 aaPredicted RBP7.95□□□□□ -1.14
USP4-202ENST00000351842 DGUOKQ16854 277 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 NKPD1Q17RQ9 610 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 TMEM200AQ86VY9 491 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 NDNFQ8TB73 568 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 SGK3Q96BR1 496 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 VRK1Q99986 396 aaPredicted RBP7.95□□□□□ -1.14
USP4-202ENST00000351842 OR10A2Q9H208 303 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 NIPAL2Q9H841 368 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 UBTD1Q9HAC8 227 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 B3GNT2Q9NY97 397 aa7.95□□□□□ -1.14
USP4-202ENST00000351842 MEX3AA1L020 520 aaKnown RBP7.94□□□□□ -1.14
USP4-202ENST00000351842 GABRPO00591 440 aa7.94□□□□□ -1.14
USP4-202ENST00000351842 SPRY3O43610 288 aa7.94□□□□□ -1.14
USP4-202ENST00000351842 FCER2P06734 321 aa7.94□□□□□ -1.14
USP4-202ENST00000351842 ACKR3P25106 362 aa7.94□□□□□ -1.14
USP4-202ENST00000351842 ALDH3B1P43353 468 aa7.94□□□□□ -1.14
USP4-202ENST00000351842 POU3F4P49335 361 aa7.94□□□□□ -1.14
USP4-202ENST00000351842 UCP2P55851 309 aa7.94□□□□□ -1.14
USP4-202ENST00000351842 OR10A3P58181 314 aa7.94□□□□□ -1.14
USP4-202ENST00000351842 MALLQ13021 153 aa7.94□□□□□ -1.14
USP4-202ENST00000351842 XKRXQ6PP77 449 aa7.94□□□□□ -1.14
USP4-202ENST00000351842 RNF144BQ7Z419 303 aa7.94□□□□□ -1.14
USP4-202ENST00000351842 C19orf18Q8NEA5 215 aa7.94□□□□□ -1.14
USP4-202ENST00000351842 RGP1Q92546 391 aaPredicted RBP7.94□□□□□ -1.14
USP4-202ENST00000351842 SMIM19Q96E16 107 aa7.94□□□□□ -1.14
USP4-202ENST00000351842 GPER1Q99527 375 aa7.94□□□□□ -1.14
USP4-202ENST00000351842 KCNK15Q9H427 330 aa7.94□□□□□ -1.14
USP4-202ENST00000351842 OBP2BQ9NPH6 170 aa7.94□□□□□ -1.14
USP4-202ENST00000351842 MRPS18AQ9NVS2 196 aaKnown RBP7.94□□□□□ -1.14
USP4-202ENST00000351842 FAM206AQ9NX38 181 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms