RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 NEURL2Q9BR09 285 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 TXNIPQ9H3M7 391 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 Q9N2K0 584 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 ZNF355PQ9NSJ1 428 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 HSD17B6O14756 317 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 SNAI1O95863 264 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-202ENST00000347401 SRP9P49458 86 aaKnown RBP12.1□□□□□ -0.47
COL6A3-202ENST00000347401 OR8B8Q15620 311 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 FXNQ16595 210 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 DRAM2Q6UX65 266 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 CYHR1Q6ZMK1 362 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 ENSAO43768 121 aaKnown RBP12.1□□□□□ -0.47
COL6A3-202ENST00000347401 IQCF3P0C7M6 154 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 GPNMBQ14956 572 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 RIMKLAQ8IXN7 391 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 DUSP18Q8NEJ0 188 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 OR10D4PQ8NGN7 298 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 GOT1L1Q8NHS2 421 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-202ENST00000347401 MAP1LC3CQ9BXW4 147 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 SMG9Q9H0W8 520 aaKnown RBP12.1□□□□□ -0.47
COL6A3-202ENST00000347401 OCIAD1Q9NX40 245 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 NRASP01111 189 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 HRASP01112 189 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 KRASP01116 189 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 MPGP29372 298 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 SUMO3P55854 103 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-202ENST00000347401 PITX1P78337 314 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-202ENST00000347401 LGALSLQ3ZCW2 172 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-202ENST00000347401 SLC16A12Q6ZSM3 486 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 KIAA1958Q8N8K9 716 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 NUDCD2Q8WVJ2 157 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 TMEM265A0A087WTH1 108 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 P2RY10O00398 339 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 MBTPS2O43462 519 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 ZNF17P17021 662 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 TMEM11P17152 192 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 RAD52P43351 418 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 C19orf57Q0VDD7 668 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 SPANXN5Q5MJ07 72 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 LRRC15Q8TF66 581 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 H0YIG0 161 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 PLPP2O43688 288 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 LGALS4P56470 323 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 TMEM123Q8N131 208 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 GNB4Q9HAV0 340 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 PAX5Q02548 391 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 OR5I1Q13606 314 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 Q7L0L9 218 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 ZNF384Q8TF68 577 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 COL25A1Q9BXS0 654 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-202ENST00000347401 TMEM191AQ9H0A3 160 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 TAAR2Q9P1P5 351 aa12.1□□□□□ -0.47
COL6A3-202ENST00000347401 C19orf53Q9UNZ5 99 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-202ENST00000347401 SLC22A20A6NK97 555 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 CDRT15L2A8MXV6 281 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 PDE6DO43924 150 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 SLC25A1P53007 311 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 ACVR1Q04771 509 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 PLAC9Q5JTB6 97 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 ABHD17CQ6PCB6 329 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 GPR137Q96N19 417 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 MACROD1Q9BQ69 325 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 FAM103A1Q9BTL3 118 aaKnown RBP12.09□□□□□ -0.47
COL6A3-202ENST00000347401 BTF3P20290 206 aaKnown RBP12.09□□□□□ -0.47
COL6A3-202ENST00000347401 RACK1P63244 317 aaKnown RBP12.09□□□□□ -0.47
COL6A3-202ENST00000347401 FABP5Q01469 135 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 COL5A1-AS1Q5SY13 56 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 TMEM81Q6P7N7 255 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 BCL7CQ8WUZ0 217 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-202ENST00000347401 TIMD4Q96H15 378 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 PLA2G12AQ9BZM1 189 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 LAT2Q9GZY6 243 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 OCEL1Q9H607 264 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 CNOT1A5YKK6 2376 aaKnown RBP12.09□□□□□ -0.47
COL6A3-202ENST00000347401 OR10J1P30954 320 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 FAM3BP58499 235 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-202ENST00000347401 CMTM4Q8IZR5 234 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 UBALD1Q8TB05 177 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 HDGFL3Q9Y3E1 203 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 ZNF646O15015 1829 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-202ENST00000347401 DEGS2Q6QHC5 323 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 FER1L6-AS2Q96M78 137 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 LPAR3Q9UBY5 353 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 CHST2Q9Y4C5 530 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 PSMB2P49721 201 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 HERVK_113P61574 105 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 SELENBP1Q13228 472 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 MRM1Q6IN84 353 aaKnown RBP12.09□□□□□ -0.47
COL6A3-202ENST00000347401 ADPRHL1Q8NDY3 354 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 OR10X1Q8NGY0 326 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 GMPPAQ96IJ6 420 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-202ENST00000347401 LSM2Q9Y333 95 aaKnown RBP12.09□□□□□ -0.47
COL6A3-202ENST00000347401 KLRC4-KLRK1H3BQV0 150 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 SLC25A6P12236 298 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 RHOBP62745 196 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 DCAF12Q5T6F0 453 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 CD300LDQ6UXZ3 194 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 REC114Q7Z4M0 266 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 HSD11B1LQ7Z5J1 315 aa12.09□□□□□ -0.47
COL6A3-202ENST00000347401 CHST14Q8NCH0 376 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms