RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 TIMD4Q96H15 378 aa13.34□□□□□ -0.27
CLN3-201ENST00000333496 BRD7Q9NPI1 651 aa13.34□□□□□ -0.27
CLN3-201ENST00000333496 LRP12Q9Y561 859 aa13.34□□□□□ -0.27
CLN3-201ENST00000333496 WNK2Q9Y3S1 2297 aa13.34□□□□□ -0.27
CLN3-201ENST00000333496 GGT3PA6NGU5 568 aa13.33□□□□□ -0.28
CLN3-201ENST00000333496 E9PQ18 207 aa13.33□□□□□ -0.28
CLN3-201ENST00000333496 PSMD9O00233 223 aa13.33□□□□□ -0.28
CLN3-201ENST00000333496 CLIC3O95833 236 aa13.33□□□□□ -0.28
CLN3-201ENST00000333496 IGHV2-70P01814 119 aa13.33□□□□□ -0.28
CLN3-201ENST00000333496 IGHV2-5P01817 119 aa13.33□□□□□ -0.28
CLN3-201ENST00000333496 APOC1P02654 83 aa13.33□□□□□ -0.28
CLN3-201ENST00000333496 CA6P23280 308 aa13.33□□□□□ -0.28
CLN3-201ENST00000333496 PMELP40967 661 aa13.33□□□□□ -0.28
CLN3-201ENST00000333496 MMP16P51512 607 aa13.33□□□□□ -0.28
CLN3-201ENST00000333496 FAM3AP98173 230 aa13.33□□□□□ -0.28
CLN3-201ENST00000333496 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.33□□□□□ -0.28
CLN3-201ENST00000333496 RFLNBQ8N5W9 214 aa13.33□□□□□ -0.28
CLN3-201ENST00000333496 OR56B2PQ8NGI1 322 aa13.33□□□□□ -0.28
CLN3-201ENST00000333496 REEP6Q96HR9 211 aa13.33□□□□□ -0.28
CLN3-201ENST00000333496 ZNF665Q9H7R5 613 aa13.33□□□□□ -0.28
CLN3-201ENST00000333496 ADGRL4Q9HBW9 690 aa13.33□□□□□ -0.28
CLN3-201ENST00000333496 JMJD1CQ15652 2540 aa13.33□□□□□ -0.28
CLN3-201ENST00000333496 LOC100130705A0A1B0GUX0 176 aa13.32□□□□□ -0.28
CLN3-201ENST00000333496 SLC22A31A6NKX4 558 aa13.32□□□□□ -0.28
CLN3-201ENST00000333496 B4DSR2 109 aa13.32□□□□□ -0.28
CLN3-201ENST00000333496 SLC16A6O15403 523 aa13.32□□□□□ -0.28
CLN3-201ENST00000333496 SRP9P49458 86 aaKnown RBP13.32□□□□□ -0.28
CLN3-201ENST00000333496 TIGD6Q17RP2 521 aa13.32□□□□□ -0.28
CLN3-201ENST00000333496 CHRFAM7AQ494W8 412 aa13.32□□□□□ -0.28
CLN3-201ENST00000333496 OR52H1Q8NGJ2 320 aa13.32□□□□□ -0.28
CLN3-201ENST00000333496 DVL3Q92997 716 aaPredicted RBP13.32□□□□□ -0.28
CLN3-201ENST00000333496 TTTY10Q9BZA0 68 aa13.32□□□□□ -0.28
CLN3-201ENST00000333496 OPA3Q9H6K4 179 aa13.32□□□□□ -0.28
CLN3-201ENST00000333496 HAO2Q9NYQ3 351 aa13.32□□□□□ -0.28
CLN3-201ENST00000333496 MRPL15Q9P015 296 aaKnown RBP13.32□□□□□ -0.28
CLN3-201ENST00000333496 H2AFY2Q9P0M6 372 aaPredicted RBP13.32□□□□□ -0.28
CLN3-201ENST00000333496 hCG_38984A0A1B0GV85 526 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 TMEM178BH3BS89 294 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 CD200P41217 278 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 GATA4P43694 442 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 DVL1P1P54792 670 aaPredicted RBP13.31□□□□□ -0.28
CLN3-201ENST00000333496 PSMA6P60900 246 aaKnown RBP13.31□□□□□ -0.28
CLN3-201ENST00000333496 FAM120AOSQ5T036 256 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 IL17RELQ6ZVW7 336 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 KRT77Q7Z794 578 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 PEG10Q86TG7 708 aaKnown RBP13.31□□□□□ -0.28
CLN3-201ENST00000333496 MOGAT3Q86VF5 341 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 UBE2FQ969M7 185 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 PGAM5Q96HS1 289 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 CNN2Q99439 309 aaKnown RBP13.31□□□□□ -0.28
CLN3-201ENST00000333496 GAL3ST1Q99999 423 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 SP140LQ9H930 580 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 LPAR2Q9HBW0 351 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 CDC42EP3Q9UKI2 254 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 MXRA5Q9NR99 2828 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 ISPDA4D126 451 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 MSMBP08118 114 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 SBK2P0C263 348 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 DDOSTP39656 456 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 ROM1Q03395 351 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 ZMYND11Q15326 602 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 OR8G1Q15617 311 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 CR1LQ2VPA4 569 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 KCTD18Q6PI47 426 aaPredicted RBP13.31□□□□□ -0.28
CLN3-201ENST00000333496 DEGS2Q6QHC5 323 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 LRRC28Q86X40 367 aaPredicted RBP13.31□□□□□ -0.28
CLN3-201ENST00000333496 GID4Q8IVV7 300 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 CELF2-AS1Q8N7Q2 184 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 OR8B12Q8NGG6 310 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 OR8J1Q8NGP2 316 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 HRASLS5Q96KN8 279 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 LYZL4Q96KX0 146 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 OR8B4Q96RC9 309 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 ADAT1Q9BUB4 502 aaKnown RBP13.31□□□□□ -0.28
CLN3-201ENST00000333496 SLC22A4Q9H015 551 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 OR10A2Q9H208 303 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 NIPAL2Q9H841 368 aa13.31□□□□□ -0.28
CLN3-201ENST00000333496 MAGEB4O15481 346 aaPredicted RBP13.3□□□□□ -0.28
CLN3-201ENST00000333496 GMDSO60547 372 aa13.3□□□□□ -0.28
CLN3-201ENST00000333496 PTBP3O95758 552 aaKnown RBP13.3□□□□□ -0.28
CLN3-201ENST00000333496 CYB5R3P00387 301 aaPredicted RBP13.3□□□□□ -0.28
CLN3-201ENST00000333496 GSK3AP49840 483 aa13.3□□□□□ -0.28
CLN3-201ENST00000333496 CXCR4P61073 352 aa13.3□□□□□ -0.28
CLN3-201ENST00000333496 BTG1P62324 171 aa13.3□□□□□ -0.28
CLN3-201ENST00000333496 IL18R1Q13478 541 aa13.3□□□□□ -0.28
CLN3-201ENST00000333496 MPPED2Q15777 294 aa13.3□□□□□ -0.28
CLN3-201ENST00000333496 ZNF181Q2M3W8 571 aa13.3□□□□□ -0.28
CLN3-201ENST00000333496 GFOD2Q3B7J2 385 aa13.3□□□□□ -0.28
CLN3-201ENST00000333496 RBM48Q5RL73 367 aaKnown RBP13.3□□□□□ -0.28
CLN3-201ENST00000333496 PRAMEF6Q5VXH4 476 aa13.3□□□□□ -0.28
CLN3-201ENST00000333496 SLC35F2Q8IXU6 374 aa13.3□□□□□ -0.28
CLN3-201ENST00000333496 ZNF679Q8IYX0 411 aa13.3□□□□□ -0.28
CLN3-201ENST00000333496 C8orf59Q8N0T1 100 aaPredicted RBP13.3□□□□□ -0.28
CLN3-201ENST00000333496 TMEM186Q96B77 213 aa13.3□□□□□ -0.28
CLN3-201ENST00000333496 ISOC1Q96CN7 298 aa13.3□□□□□ -0.28
CLN3-201ENST00000333496 RAB39BQ96DA2 213 aa13.3□□□□□ -0.28
CLN3-201ENST00000333496 BEX2Q9BXY8 128 aa13.3□□□□□ -0.28
CLN3-201ENST00000333496 MROQ9BYG7 248 aa13.3□□□□□ -0.28
CLN3-201ENST00000333496 SHARPINQ9H0F6 387 aa13.3□□□□□ -0.28
CLN3-201ENST00000333496 PPP1R3EQ9H7J1 279 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms