RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 CCL15-CCL14A0A0B4J2E2 113 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 A0A1B0GVI7 797 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 A0A1W2PRD5 423 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 PLAC8L1A1L4L8 177 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 ZNF726A6NNF4 738 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 K7ERQ8 282 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 PSMD11O00231 422 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 CDC7O00311 574 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 POLR1CO15160 346 aaPredicted RBP2.07□□□□□ -2.08
HMGB1-201ENST00000326004 YKT6O15498 198 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 RRP8O43159 456 aaKnown RBP2.07□□□□□ -2.08
HMGB1-201ENST00000326004 NMT2O60551 498 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 EEDO75530 441 aaKnown RBP2.07□□□□□ -2.08
HMGB1-201ENST00000326004 EIF3GO75821 320 aaKnown RBP eCLIP2.07□□□□□ -2.08
HMGB1-201ENST00000326004 HLA-HP01893 362 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 SERPINA5P05154 406 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 IGKV1-13P0DP09 117 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 ZNF30P17039 623 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 CTRB1P17538 263 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 CNR1P21554 472 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 PRKACBP22694 351 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 RANBP1P43487 201 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 UBE2AP49459 152 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 SSR4P51571 173 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 CCNG1P51959 295 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 PFN3P60673 137 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 UBE2MP61081 183 aaKnown RBP2.07□□□□□ -2.08
HMGB1-201ENST00000326004 ZNF92Q03936 586 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 CDH17Q12864 832 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 EBI3Q14213 229 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 PRPSAP1Q14558 356 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 STK38Q15208 465 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 CCL15Q16663 113 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 TTLL9Q3SXZ7 439 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 HSP90AA4PQ58FG1 418 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 VAX1Q5SQQ9 334 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 GPR107Q5VW38 600 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 ANKRD26P1Q6NSI1 321 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 TTC23LQ6PF05 361 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 SPESP1Q6UW49 350 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 CMC1Q7Z7K0 106 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 APRG1Q8IVJ8 170 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 C12orf56Q8IXR9 622 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 PDIK1LQ8N165 341 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 KRT222Q8N1A0 295 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 TCAIMQ8N3R3 496 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 MREGQ8N565 214 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 TRIML2Q8N7C3 387 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 PRELID2Q8N945 189 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 HSD17B11Q8NBQ5 300 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 INO80EQ8NBZ0 244 aaPredicted RBP2.07□□□□□ -2.08
HMGB1-201ENST00000326004 TMEM104Q8NE00 496 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 FBXO36Q8NEA4 188 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 CXorf40AQ8TE69 158 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 CA5BP1Q8WTZ4 195 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 ANKRD7Q92527 254 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 CIDECQ96AQ7 238 aaPredicted RBP2.07□□□□□ -2.08
HMGB1-201ENST00000326004 LRRC58Q96CX6 371 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 MED8Q96G25 268 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 CEP170P1Q96L14 293 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 ATP6V1G3Q96LB4 118 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 C9orf72Q96LT7 481 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 CSPG4P5Q96PW8 444 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 RARRES2Q99969 163 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 TMEM175Q9BSA9 504 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 GABARAPL3Q9BY60 117 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 SLC7A5P2Q9GIP4 190 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 SYNDIG1Q9H7V2 258 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 UGT1A7Q9HAW7 530 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 UGT1A8Q9HAW9 530 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 NTN4Q9HB63 628 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 SAMSN1Q9NSI8 373 aaKnown RBP2.07□□□□□ -2.08
HMGB1-201ENST00000326004 HRASLS2Q9NWW9 162 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 UBAP1Q9NZ09 502 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 F11RQ9Y624 299 aaKnown RBP2.07□□□□□ -2.08
HMGB1-201ENST00000326004 V9GYY5 206 aaPredicted RBP2.07□□□□□ -2.08
HMGB1-201ENST00000326004 NFASCO94856 1347 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 MAP2P11137 1827 aaKnown RBP2.07□□□□□ -2.08
HMGB1-201ENST00000326004 CD163L1Q9NR16 1453 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 SSC5DA1L4H1 1573 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 A0A0G2JMZ2 1700 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 DDX60LQ5H9U9 1706 aaKnown RBP2.06□□□□□ -2.08
HMGB1-201ENST00000326004 NRXN2Q9P2S2 1712 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 DENND4AQ7Z401 1863 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 WDFY4Q6ZS81 3184 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 IGKV2D-24A0A075B6R9 120 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 HSBP1L1C9JCN9 74 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 ANKRD63C9JTQ0 380 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 C11orf94C9JXX5 98 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 F8VZ95 297 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 MRPS12O15235 138 aaKnown RBP2.06□□□□□ -2.08
HMGB1-201ENST00000326004 SPAG7O75391 227 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 APOA1P02647 267 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 ACSM4P0C7M7 580 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 SERPINB5P36952 375 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 CFHR2P36980 270 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 AQP2P41181 271 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 GPR4P46093 362 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 ZNF136P52737 540 aa2.06□□□□□ -2.08
HMGB1-201ENST00000326004 PSMD4P55036 377 aaKnown RBP2.06□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms