RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 TEAD3Q99594 435 aa14.07□□□□□ -0.16
HCFC1-201ENST00000310441 RNF186Q9NXI6 227 aa14.07□□□□□ -0.16
HCFC1-201ENST00000310441 PRSS21Q9Y6M0 314 aa14.07□□□□□ -0.16
HCFC1-201ENST00000310441 CLDN15P56746 228 aa14.07□□□□□ -0.16
HCFC1-201ENST00000310441 OR4C16Q8NGL9 310 aa14.07□□□□□ -0.16
HCFC1-201ENST00000310441 ZNF296Q8WUU4 475 aaPredicted RBP14.07□□□□□ -0.16
HCFC1-201ENST00000310441 SARAFQ96BY9 339 aa14.07□□□□□ -0.16
HCFC1-201ENST00000310441 UBE2L5PA0A1B0GUS4 154 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 CST5P28325 142 aaPredicted RBP14.06□□□□□ -0.16
HCFC1-201ENST00000310441 BHLHE23Q8NDY6 225 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 MOB3AQ96BX8 217 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 BANF2Q9H503 90 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 SLC45A2Q9UMX9 530 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 VMA21Q3ZAQ7 101 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 C6orf15Q6UXA7 325 aaPredicted RBP14.06□□□□□ -0.16
HCFC1-201ENST00000310441 DOLPP1Q86YN1 238 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 AMMECR1Q9Y4X0 333 aaPredicted RBP14.06□□□□□ -0.16
HCFC1-201ENST00000310441 COL16A1Q07092 1604 aaPredicted RBP14.06□□□□□ -0.16
HCFC1-201ENST00000310441 GALP22466 123 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 DHRS7BQ6IAN0 325 aaPredicted RBP14.06□□□□□ -0.16
HCFC1-201ENST00000310441 TEX261Q6UWH6 196 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 CALHM3Q86XJ0 350 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 PHYHIPLQ96FC7 376 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 TXNIPQ9H3M7 391 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 U3KQ87 197 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 FREM3P0C091 2139 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 C7orf72A4D263 438 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 CD22P20273 847 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 TMEM102Q8N9M5 508 aaPredicted RBP14.06□□□□□ -0.16
HCFC1-201ENST00000310441 OR5M11Q96RB7 305 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 INSM2Q96T92 566 aaPredicted RBP14.06□□□□□ -0.16
HCFC1-201ENST00000310441 SPNS1Q9H2V7 528 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 TMED3Q9Y3Q3 217 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 ZBTB25P24278 435 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 PRR27Q6MZM9 219 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 ZNF680Q8NEM1 530 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 ST8SIA2Q92186 375 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 TTC9Q92623 222 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 RAB40CQ96S21 281 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 RHOFQ9HBH0 211 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 COA3Q9Y2R0 106 aaPredicted RBP14.06□□□□□ -0.16
HCFC1-201ENST00000310441 ZNF528Q3MIS6 628 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 ABLIM2Q6H8Q1 611 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 TTC9BQ8N6N2 239 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 OR10C1Q96KK4 312 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 MACROD1Q9BQ69 325 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 OCEL1Q9H607 264 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 GPR84Q9NQS5 396 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 ASH2LQ9UBL3 628 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 MAT1AQ00266 395 aaKnown RBP14.06□□□□□ -0.16
HCFC1-201ENST00000310441 TOMM34Q15785 309 aaPredicted RBP14.06□□□□□ -0.16
HCFC1-201ENST00000310441 TUSC1Q2TAM9 212 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 ADAT1Q9BUB4 502 aaKnown RBP14.06□□□□□ -0.16
HCFC1-201ENST00000310441 ZNF407Q9C0G0 2248 aa14.06□□□□□ -0.16
HCFC1-201ENST00000310441 NKAIN1Q4KMZ8 207 aa14.05□□□□□ -0.16
HCFC1-201ENST00000310441 FOXJ3Q9UPW0 622 aa14.05□□□□□ -0.16
HCFC1-201ENST00000310441 ZNF749O43361 778 aa14.05□□□□□ -0.16
HCFC1-201ENST00000310441 SFTA3P0C7M3 94 aa14.05□□□□□ -0.16
HCFC1-201ENST00000310441 EPHA2P29317 976 aa14.05□□□□□ -0.16
HCFC1-201ENST00000310441 COX20Q5RI15 118 aa14.05□□□□□ -0.16
HCFC1-201ENST00000310441 ZBTB37Q5TC79 503 aa14.05□□□□□ -0.16
HCFC1-201ENST00000310441 ZNF26P17031 533 aaPredicted RBP14.05□□□□□ -0.16
HCFC1-201ENST00000310441 TOMM20LQ6UXN7 152 aa14.05□□□□□ -0.16
HCFC1-201ENST00000310441 ARRDC2Q8TBH0 407 aa14.05□□□□□ -0.16
HCFC1-201ENST00000310441 ZNF785A8K8V0 405 aa14.05□□□□□ -0.16
HCFC1-201ENST00000310441 CGGBP1Q9UFW8 167 aaPredicted RBP14.05□□□□□ -0.16
HCFC1-201ENST00000310441 HSPB8Q9UJY1 196 aa14.05□□□□□ -0.16
HCFC1-201ENST00000310441 TMEM30CPA0ZSE6 113 aa14.05□□□□□ -0.16
HCFC1-201ENST00000310441 PRSS37A4D1T9 235 aa14.05□□□□□ -0.16
HCFC1-201ENST00000310441 LRP10Q7Z4F1 713 aa14.05□□□□□ -0.16
HCFC1-201ENST00000310441 MARCH3Q86UD3 253 aa14.05□□□□□ -0.16
HCFC1-201ENST00000310441 PPP1R1CQ8WVI7 109 aa14.05□□□□□ -0.16
HCFC1-201ENST00000310441 HCFC1R1Q9NWW0 138 aa14.05□□□□□ -0.16
HCFC1-201ENST00000310441 ATP23Q9Y6H3 246 aa14.05□□□□□ -0.16
HCFC1-201ENST00000310441 ARFGEF1Q9Y6D6 1849 aa14.05□□□□□ -0.16
HCFC1-201ENST00000310441 QDPRP09417 244 aa14.05□□□□□ -0.16
HCFC1-201ENST00000310441 SMAD2Q15796 467 aaKnown RBP14.05□□□□□ -0.16
HCFC1-201ENST00000310441 AKR7A3O95154 331 aa14.05□□□□□ -0.16
HCFC1-201ENST00000310441 DOCK3Q8IZD9 2030 aa14.04□□□□□ -0.16
HCFC1-201ENST00000310441 IL5P05113 134 aa14.04□□□□□ -0.16
HCFC1-201ENST00000310441 PNRC1Q12796 327 aaPredicted RBP14.04□□□□□ -0.16
HCFC1-201ENST00000310441 ZDHHC22Q8N966 263 aa14.04□□□□□ -0.16
HCFC1-201ENST00000310441 APOBEC3DQ96AK3 386 aaPredicted RBP14.04□□□□□ -0.16
HCFC1-201ENST00000310441 ST3GAL6Q9Y274 331 aa14.04□□□□□ -0.16
HCFC1-201ENST00000310441 EVX1P49640 407 aa14.04□□□□□ -0.16
HCFC1-201ENST00000310441 SUMO3P55854 103 aaPredicted RBP14.04□□□□□ -0.16
HCFC1-201ENST00000310441 ZNF511Q8NB15 262 aa14.04□□□□□ -0.16
HCFC1-201ENST00000310441 LRFN3Q9BTN0 628 aa14.04□□□□□ -0.16
HCFC1-201ENST00000310441 SLC35B3Q9H1N7 401 aa14.04□□□□□ -0.16
HCFC1-201ENST00000310441 FBXO4Q9UKT5 387 aa14.04□□□□□ -0.16
HCFC1-201ENST00000310441 C19orf53Q9UNZ5 99 aaPredicted RBP14.04□□□□□ -0.16
HCFC1-201ENST00000310441 HIST1H1CP16403 213 aaKnown RBP14.04□□□□□ -0.16
HCFC1-201ENST00000310441 OSR2Q8N2R0 312 aa14.04□□□□□ -0.16
HCFC1-201ENST00000310441 ANAPC16Q96DE5 110 aa14.04□□□□□ -0.16
HCFC1-201ENST00000310441 ZC3HAV1LQ96H79 300 aaKnown RBP14.04□□□□□ -0.16
HCFC1-201ENST00000310441 THOC3Q96J01 351 aaKnown RBP14.04□□□□□ -0.16
HCFC1-201ENST00000310441 PDLIM7Q9NR12 457 aa14.04□□□□□ -0.16
HCFC1-201ENST00000310441 CLEC2DQ9UHP7 191 aa14.04□□□□□ -0.16
HCFC1-201ENST00000310441 ZNF716A6NP11 495 aa14.04□□□□□ -0.16
HCFC1-201ENST00000310441 KIAA1324LA8MWY0 1029 aaPredicted RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms