RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 GAGE10A6NGK3 116 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 H3BMH7 237 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 C1orf105O95561 183 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 PCCBP05166 539 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 CT45A10P0DMU9 189 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 MPGP29372 298 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 SNU13P55769 128 aaKnown RBP4.23□□□□□ -1.73
SCN1A-220ENST00000641603 TMEM33P57088 247 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 GPR137CQ8N3F9 429 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF480Q8WV37 535 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 WDR61Q9GZS3 305 aaKnown RBP4.23□□□□□ -1.73
SCN1A-220ENST00000641603 IL17BQ9UHF5 180 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 C19orf53Q9UNZ5 99 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-220ENST00000641603 LOC107986453A0A1B0GWG9 222 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 TNFSF15O95150 251 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 GPANK1O95872 356 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 F7P08709 466 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-220ENST00000641603 SLC35E2P0CK97 266 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 G6PCP35575 357 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 CTBSQ01459 385 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 GLIPR1L1Q6UWM5 242 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 SECTM1Q8WVN6 248 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 TMEM37Q8WXS4 190 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 SPACA7Q96KW9 195 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 GMLQ99445 158 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 SIRT3Q9NTG7 399 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-220ENST00000641603 FBXL17Q9UF56 701 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 ZBTB42B2RXF5 422 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 TRAPPC2LH3BP13 241 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 TGM5O43548 720 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 RD3LP0DJH9 198 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 BCL2P10415 239 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 CSN1S1P47710 185 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 DUSP5Q16690 384 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 PRAMEF20Q5VT98 475 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 OR2C3Q8N628 320 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 GDE1Q9NZC3 331 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 LAMB1P07942 1786 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 LINC00587B1AMM8 73 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 TMEM250H0YL14 139 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 PITX3O75364 302 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 CTAG2O75638 210 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 CLEC3BP05452 202 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 SUMO3P55854 103 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-220ENST00000641603 HIKESHIQ53FT3 197 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 NCMAPQ5T1S8 102 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 ACSM5Q6NUN0 579 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 SLC39A5Q6ZMH5 540 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 CELF5Q8N6W0 485 aaKnown RBP4.23□□□□□ -1.73
SCN1A-220ENST00000641603 OR5A1Q8NGJ0 315 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 ADGRG7Q96K78 797 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 S1PR5Q9H228 398 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 KCNK15Q9H427 330 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 SLC2A4RGQ9NR83 387 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF264O43296 627 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 FBXO45P0C2W1 286 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 C8orf89P0DMQ9 161 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 RCC1P18754 421 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-220ENST00000641603 HRH1P35367 487 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 PRDX1Q06830 199 aaKnown RBP4.23□□□□□ -1.73
SCN1A-220ENST00000641603 MRPL21Q7Z2W9 205 aaKnown RBP4.23□□□□□ -1.73
SCN1A-220ENST00000641603 TCTN2Q96GX1 697 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 REEP6Q96HR9 211 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 TTTY10Q9BZA0 68 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 HAPLN2Q9GZV7 340 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 PRDM7Q9NQW5 492 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 SLC2A8Q9NY64 477 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 DOK5Q9P104 306 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 B3GAT1Q9P2W7 334 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 DIRC3C9JPN6 131 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 FCN1O00602 326 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 GPM6AP51674 278 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 CARD18P57730 90 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF761Q86XN6 746 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-220ENST00000641603 ARIH2OSQ8N7S6 290 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 OR2I1PQ8NGU4 316 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 SLC35A4Q96G79 324 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 MBD1Q9UIS9 605 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-220ENST00000641603 A0A1B0GV90 55 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 A0A1B0GWA3 101 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 ASPDHA6ND91 283 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 SERINC4A6NH21 518 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 ITGB1BP1O14713 200 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 BIDP55957 195 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 MFAP5Q13361 173 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 PPP1R1AQ13522 171 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 TEX37Q96LM6 180 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 TRIB1Q96RU8 372 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 ZBP1Q9H171 429 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 CBR3O75828 277 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 LCATP04180 440 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 MELTFP08582 738 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 HNRNPA1P09651 372 aaKnown RBP eCLIP4.23□□□□□ -1.73
SCN1A-220ENST00000641603 ELAVL1Q15717 326 aaKnown RBP4.23□□□□□ -1.73
SCN1A-220ENST00000641603 TRAT1Q6PIZ9 186 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 LHFPL2Q6ZUX7 228 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 MDGA1Q8NFP4 955 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 OR5K2Q8NHB8 316 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 KLRG1Q96E93 195 aa4.23□□□□□ -1.73
SCN1A-220ENST00000641603 MIEN1Q9BRT3 115 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms