RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 RAMP3O60896 148 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 STK17BO94768 372 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 ST6GAL1P15907 406 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 ZBTB25P24278 435 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 MAS1LP35410 378 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 ID4P47928 161 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 PIGPP57054 158 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 COL10A1Q03692 680 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 HSPB3Q12988 150 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 LCN10Q6JVE6 187 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 UNQ5815/PRO19632Q6UWF5 114 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 ZNF765Q7L2R6 523 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 IL22RA1Q8N6P7 574 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 OR5AU1Q8NGC0 362 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 OR4X1Q8NH49 305 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 ALG12Q9BV10 488 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 C1QTNF2Q9BXJ5 285 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 KLK14Q9P0G3 267 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 AK3Q9UIJ7 227 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 CORTO00230 105 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 SPINT1O43278 529 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 B3GALT4O96024 378 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 PDGFBP01127 241 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-216ENST00000637968 AK4P27144 223 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-216ENST00000637968 SERPINA4P29622 427 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 JAG1P78504 1218 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 FAM3AP98173 230 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 CRMP1Q14194 572 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 LRRC70Q7Z2Q7 622 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 ACOT4Q8N9L9 421 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 TMEM229BQ8NBD8 167 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 SFRP2Q96HF1 295 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 C2orf50Q96LR7 162 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 SYT3Q9BQG1 590 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 SMG9Q9H0W8 520 aaKnown RBP5.18□□□□□ -1.58
SCN1A-216ENST00000637968 OR51I2Q9H344 312 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 IGFLR1Q9H665 355 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 TMEM38AQ9H6F2 299 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 MOB1AQ9H8S9 216 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 PIGVQ9NUD9 493 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 P2RX2Q9UBL9 471 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 IKZF2Q9UKS7 526 aa5.18□□□□□ -1.58
SCN1A-216ENST00000637968 C4orf47A7E2U8 309 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 FGF17O60258 216 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 KLK8O60259 260 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 C1QCP02747 245 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 SMIM10L2AP0DMW4 78 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 SMIM10L2BP0DMW5 78 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 PAX1P15863 534 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 ZNF20P17024 532 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 AMD1P17707 334 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 EDNRBP24530 442 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 EPHA8P29322 1005 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-216ENST00000637968 GALR1P47211 349 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 MPV17LQ2QL34 196 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 Q6ZVU0 165 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 TAS1R1Q7RTX1 841 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 VASH2Q86V25 355 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 WFDC8Q8IUA0 241 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 H1FOOQ8IZA3 346 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-216ENST00000637968 NPWQ8N729 165 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 OR4D5Q8NGN0 318 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 PPTC7Q8NI37 304 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 BOD1Q96IK1 185 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 TMEM56Q96MV1 263 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 CD180Q99467 661 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 SGK2Q9HBY8 427 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 CNIH4Q9P003 139 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 KCNK6Q9Y257 313 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 NTNG1Q9Y2I2 539 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 TRAPPC1Q9Y5R8 145 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 TMEM56-RWDD3S4R434 201 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 TMEM272A0A1B0GTI8 110 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 DCDC2BA2VCK2 349 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 ANTXRLA6NF34 631 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 OR6C6A6NF89 314 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 E5RGE8 158 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 RNASET2O00584 256 aaKnown RBP5.17□□□□□ -1.58
SCN1A-216ENST00000637968 SLC16A5O15375 505 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 RAMP1O60894 148 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 OR6A2O95222 327 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 C8AP07357 584 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 FAM157CP0CG43 387 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 PSG1P11464 419 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 ZNF28P17035 718 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 SMAD3P84022 425 aaKnown RBP5.17□□□□□ -1.58
SCN1A-216ENST00000637968 PPP1R1AQ13522 171 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 RAB35Q15286 201 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 MST1LQ2TV78 715 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 PIP5KL1Q5T9C9 394 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 ALKAL1Q6UXT8 129 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 LIPHQ8WWY8 451 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 NDRG1Q92597 394 aaKnown RBP5.17□□□□□ -1.58
SCN1A-216ENST00000637968 SAMD8Q96LT4 415 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 PRAP1Q96NZ9 151 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 SLC39A8Q9C0K1 460 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 FBXL17Q9UF56 701 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 MRPS2Q9Y399 296 aaKnown RBP5.17□□□□□ -1.58
SCN1A-216ENST00000637968 OARD1Q9Y530 152 aa5.17□□□□□ -1.58
SCN1A-216ENST00000637968 HS3ST3B1Q9Y662 390 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms