RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 GLYATL3Q5SZD4 288 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 OR2T2Q6IF00 324 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 FAM166AQ6J272 317 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 DEGS2Q6QHC5 323 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 USP51Q70EK9 711 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 C8orf59Q8N0T1 100 aaPredicted RBP15.44■□□□□ 0.06
CLN3-243ENST00000635973 OR2AE1Q8NHA4 323 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 APH1BQ8WW43 257 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 NEU4Q8WWR8 484 aaPredicted RBP15.44■□□□□ 0.06
CLN3-243ENST00000635973 GTF3AQ92664 365 aaKnown RBP15.44■□□□□ 0.06
CLN3-243ENST00000635973 HAVCR1Q96D42 359 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 TMEM160Q9NX00 188 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 KCNS2Q9ULS6 477 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 GTF2A1LQ9UNN4 478 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 RPL36Q9Y3U8 105 aaKnown RBP15.44■□□□□ 0.06
CLN3-243ENST00000635973 PCDHGB1Q9Y5G3 927 aa15.44■□□□□ 0.06
CLN3-243ENST00000635973 LOC100289279A0A1B0GTE1 492 aa15.43■□□□□ 0.06
CLN3-243ENST00000635973 A0A1W2PQL4 384 aaPredicted RBP15.43■□□□□ 0.06
CLN3-243ENST00000635973 C17orf100A8MU93 164 aa15.43■□□□□ 0.06
CLN3-243ENST00000635973 PRR32B1ATL7 298 aa15.43■□□□□ 0.06
CLN3-243ENST00000635973 VWC2LB2RUY7 222 aa15.43■□□□□ 0.06
CLN3-243ENST00000635973 TPD52L2O43399 206 aaKnown RBP15.43■□□□□ 0.06
CLN3-243ENST00000635973 XRCC2O43543 280 aa15.43■□□□□ 0.06
CLN3-243ENST00000635973 SPRY3O43610 288 aa15.43■□□□□ 0.06
CLN3-243ENST00000635973 KITLGP21583 273 aa15.43■□□□□ 0.06
CLN3-243ENST00000635973 PRSS12P56730 875 aa15.43■□□□□ 0.06
CLN3-243ENST00000635973 ROM1Q03395 351 aa15.43■□□□□ 0.06
CLN3-243ENST00000635973 PCGF3Q3KNV8 242 aa15.43■□□□□ 0.06
CLN3-243ENST00000635973 TMEM255AQ5JRV8 349 aa15.43■□□□□ 0.06
CLN3-243ENST00000635973 FAM220AQ7Z4H9 259 aa15.43■□□□□ 0.06
CLN3-243ENST00000635973 OR52H1Q8NGJ2 320 aa15.43■□□□□ 0.06
CLN3-243ENST00000635973 CNIH3Q8TBE1 160 aa15.43■□□□□ 0.06
CLN3-243ENST00000635973 SPRYD4Q8WW59 207 aaPredicted RBP15.43■□□□□ 0.06
CLN3-243ENST00000635973 TMEM158Q8WZ71 300 aa15.43■□□□□ 0.06
CLN3-243ENST00000635973 OPA3Q9H6K4 179 aa15.43■□□□□ 0.06
CLN3-243ENST00000635973 CHODLQ9H9P2 273 aa15.43■□□□□ 0.06
CLN3-243ENST00000635973 MSL2Q9HCI7 577 aa15.43■□□□□ 0.06
CLN3-243ENST00000635973 AMBNQ9NP70 447 aa15.43■□□□□ 0.06
CLN3-243ENST00000635973 TMEM269A0A1B0GVZ9 245 aa15.42■□□□□ 0.06
CLN3-243ENST00000635973 GGT3PA6NGU5 568 aa15.42■□□□□ 0.06
CLN3-243ENST00000635973 GNAO1P09471 354 aa15.42■□□□□ 0.06
CLN3-243ENST00000635973 DAOP14920 347 aa15.42■□□□□ 0.06
CLN3-243ENST00000635973 MMP15P51511 669 aa15.42■□□□□ 0.06
CLN3-243ENST00000635973 ZNF92Q03936 586 aa15.42■□□□□ 0.06
CLN3-243ENST00000635973 TSTQ16762 297 aaKnown RBP15.42■□□□□ 0.06
CLN3-243ENST00000635973 SSX6Q7RTT6 188 aa15.42■□□□□ 0.06
CLN3-243ENST00000635973 YIPF7Q8N8F6 280 aa15.42■□□□□ 0.06
CLN3-243ENST00000635973 BHLHE23Q8NDY6 225 aa15.42■□□□□ 0.06
CLN3-243ENST00000635973 LGALS12Q96DT0 336 aa15.42■□□□□ 0.06
CLN3-243ENST00000635973 REEP6Q96HR9 211 aa15.42■□□□□ 0.06
CLN3-243ENST00000635973 DECR2Q9NUI1 292 aa15.42■□□□□ 0.06
CLN3-243ENST00000635973 HSPE1-MOB4S4R3N1 261 aa15.42■□□□□ 0.06
CLN3-243ENST00000635973 STAB1Q9NY15 2570 aa15.42■□□□□ 0.06
CLN3-243ENST00000635973 DAPL1A0PJW8 107 aa15.41■□□□□ 0.06
CLN3-243ENST00000635973 C5orf63A6NC05 138 aa15.41■□□□□ 0.06
CLN3-243ENST00000635973 ZSCAN5BA6NJL1 495 aa15.41■□□□□ 0.06
CLN3-243ENST00000635973 H0YJX3 145 aa15.41■□□□□ 0.06
CLN3-243ENST00000635973 MAGEB4O15481 346 aaPredicted RBP15.41■□□□□ 0.06
CLN3-243ENST00000635973 RPP14O95059 124 aaKnown RBP15.41■□□□□ 0.06
CLN3-243ENST00000635973 FADS2O95864 444 aaKnown RBP15.41■□□□□ 0.06
CLN3-243ENST00000635973 HNF1AP20823 631 aa15.41■□□□□ 0.06
CLN3-243ENST00000635973 ANOS1P23352 680 aa15.41■□□□□ 0.06
CLN3-243ENST00000635973 CFL1P23528 166 aaKnown RBP15.41■□□□□ 0.06
CLN3-243ENST00000635973 MAGEB1P43366 347 aa15.41■□□□□ 0.06
CLN3-243ENST00000635973 SMN1Q16637 294 aaKnown RBP15.41■□□□□ 0.06
CLN3-243ENST00000635973 IZUMO2Q6UXV1 221 aa15.41■□□□□ 0.06
CLN3-243ENST00000635973 COMMD2Q86X83 199 aa15.41■□□□□ 0.06
CLN3-243ENST00000635973 MRPL48Q96GC5 212 aaKnown RBP15.41■□□□□ 0.06
CLN3-243ENST00000635973 BPESC1Q9GZL8 116 aa15.41■□□□□ 0.06
CLN3-243ENST00000635973 ZDHHC8Q9ULC8 765 aa15.41■□□□□ 0.06
CLN3-243ENST00000635973 IGHV4-61A0A0C4DH41 118 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 METTL15A6NJ78 407 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 IQCF6A8MYZ5 107 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 LOC110117498-PIK3R3F6TDL0 507 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 WBP4O75554 376 aaKnown RBP15.4■□□□□ 0.06
CLN3-243ENST00000635973 IGHV1-46P01743 117 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 TNFSF4P23510 183 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 DCTDP32321 178 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 ISL1P61371 349 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 CCL8P80075 99 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 RAB40BQ12829 278 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 KLHL22Q53GT1 634 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 BCL2L15Q5TBC7 163 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 PLEKHG7Q6ZR37 379 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 PRSS45Q7RTY3 260 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 ACBD7Q8N6N7 88 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 OR8G5Q8NG78 346 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 OR2Z1Q8NG97 314 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 OR8B12Q8NGG6 310 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 TFAP2CQ92754 450 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 DIRC2Q96SL1 478 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 MYCBPQ99417 103 aaPredicted RBP15.4■□□□□ 0.06
CLN3-243ENST00000635973 EGLN1Q9GZT9 426 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 RGCCQ9H4X1 137 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 MOB1AQ9H8S9 216 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 SAP30LQ9HAJ7 183 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 FAM206AQ9NX38 181 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 MRM2Q9UI43 246 aaKnown RBP15.4■□□□□ 0.06
CLN3-243ENST00000635973 GNG8Q9UK08 70 aa15.4■□□□□ 0.06
CLN3-243ENST00000635973 EXOGQ9Y2C4 368 aaKnown RBP15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms