RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 ZNF254O75437 659 aa13.66□□□□□ -0.22
LSM4-206ENST00000600289 PTBP3O95758 552 aaKnown RBP13.66□□□□□ -0.22
LSM4-206ENST00000600289 ANXA2P07355 339 aaKnown RBP13.66□□□□□ -0.22
LSM4-206ENST00000600289 HTR1FP30939 366 aa13.66□□□□□ -0.22
LSM4-206ENST00000600289 CD200P41217 278 aa13.66□□□□□ -0.22
LSM4-206ENST00000600289 ZNF181Q2M3W8 571 aa13.66□□□□□ -0.22
LSM4-206ENST00000600289 SLC25A30Q5SVS4 291 aa13.66□□□□□ -0.22
LSM4-206ENST00000600289 FAM166AQ6J272 317 aa13.66□□□□□ -0.22
LSM4-206ENST00000600289 BCDIN3DQ7Z5W3 292 aaKnown RBP13.66□□□□□ -0.22
LSM4-206ENST00000600289 KLBQ86Z14 1044 aa13.66□□□□□ -0.22
LSM4-206ENST00000600289 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.66□□□□□ -0.22
LSM4-206ENST00000600289 OR10AD1Q8NGE0 317 aa13.66□□□□□ -0.22
LSM4-206ENST00000600289 SPRYD4Q8WW59 207 aaPredicted RBP13.66□□□□□ -0.22
LSM4-206ENST00000600289 CCL17Q92583 94 aa13.66□□□□□ -0.22
LSM4-206ENST00000600289 STMN2Q93045 179 aa13.66□□□□□ -0.22
LSM4-206ENST00000600289 ITFG2Q969R8 447 aa13.66□□□□□ -0.22
LSM4-206ENST00000600289 OR8B4Q96RC9 309 aa13.66□□□□□ -0.22
LSM4-206ENST00000600289 SOX7Q9BT81 388 aa13.66□□□□□ -0.22
LSM4-206ENST00000600289 OR10A2Q9H208 303 aa13.66□□□□□ -0.22
LSM4-206ENST00000600289 GCM1Q9NP62 436 aa13.66□□□□□ -0.22
LSM4-206ENST00000600289 YAE1D1Q9NRH1 226 aa13.66□□□□□ -0.22
LSM4-206ENST00000600289 TMEM106BQ9NUM4 274 aa13.66□□□□□ -0.22
LSM4-206ENST00000600289 ZNF391Q9UJN7 358 aa13.66□□□□□ -0.22
LSM4-206ENST00000600289 PPP1R3CQ9UQK1 317 aa13.66□□□□□ -0.22
LSM4-206ENST00000600289 hCG_38984A0A1B0GV85 526 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 GGT3PA6NGU5 568 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 H0YL77 283 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 FSTL3O95633 263 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 IFNA2P01563 188 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 MRPL3P09001 348 aaKnown RBP13.65□□□□□ -0.22
LSM4-206ENST00000600289 SBK2P0C263 348 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 MMP16P51512 607 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 PRSS12P56730 875 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 LMO4P61968 165 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 FAM3AP98173 230 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 POU4F2Q12837 409 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 ZSCAN26Q16670 478 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 TIGD6Q17RP2 521 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 KRTAP24-1Q3LI83 254 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 LRRN1Q6UXK5 716 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 FAM57BQ71RH2 274 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 KRT77Q7Z794 578 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 PEG10Q86TG7 708 aaKnown RBP13.65□□□□□ -0.22
LSM4-206ENST00000600289 ZNF679Q8IYX0 411 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 LINC01356Q8N9X3 169 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 RFKQ969G6 155 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 ERGIC1Q969X5 290 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 SGK3Q96BR1 496 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 REEP6Q96HR9 211 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 SIGLEC11Q96RL6 698 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 MROQ9BYG7 248 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 CLN6Q9NWW5 311 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 COPS3Q9UNS2 423 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 NPTNQ9Y639 398 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 TGP01266 2768 aa13.65□□□□□ -0.22
LSM4-206ENST00000600289 LOC100289279A0A1B0GTE1 492 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 B4DSR2 109 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 F5H5P2 479 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 WNT9BO14905 357 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 TBX1O43435 398 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 IGHV2-70P01814 119 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 HCCSP53701 268 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 SNRPGP62308 76 aaKnown RBP13.64□□□□□ -0.23
LSM4-206ENST00000600289 EGR3Q06889 387 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 OR8B8Q15620 311 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 SNCBQ16143 134 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 SLC35F2Q8IXU6 374 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 SPERTQ8NA61 448 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 PLPP7Q8NBV4 271 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 OR56B2PQ8NGI1 322 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 FAM81AQ8TBF8 368 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 Q8TCH9 128 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 EME1Q96AY2 570 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 RAB39BQ96DA2 213 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 PGAM5Q96HS1 289 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 MBOAT4Q96T53 435 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 DNAJC27Q9NZQ0 273 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 ZNF319Q9P2F9 582 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 KCNS2Q9ULS6 477 aa13.64□□□□□ -0.23
LSM4-206ENST00000600289 PRR32B1ATL7 298 aa13.63□□□□□ -0.23
LSM4-206ENST00000600289 KCNAB3O43448 404 aa13.63□□□□□ -0.23
LSM4-206ENST00000600289 LMX1BO60663 402 aa13.63□□□□□ -0.23
LSM4-206ENST00000600289 IGHV2-5P01817 119 aa13.63□□□□□ -0.23
LSM4-206ENST00000600289 DVL1P1P54792 670 aaPredicted RBP13.63□□□□□ -0.23
LSM4-206ENST00000600289 MVKQ03426 396 aa13.63□□□□□ -0.23
LSM4-206ENST00000600289 GABPB1Q06547 395 aaPredicted RBP13.63□□□□□ -0.23
LSM4-206ENST00000600289 MAB21L1Q13394 359 aa13.63□□□□□ -0.23
LSM4-206ENST00000600289 OR8G1Q15617 311 aa13.63□□□□□ -0.23
LSM4-206ENST00000600289 OCLNQ16625 522 aa13.63□□□□□ -0.23
LSM4-206ENST00000600289 TMEM155Q4W5P6 130 aa13.63□□□□□ -0.23
LSM4-206ENST00000600289 AVPI1Q5T686 147 aa13.63□□□□□ -0.23
LSM4-206ENST00000600289 MEDAGQ5VYS4 303 aa13.63□□□□□ -0.23
LSM4-206ENST00000600289 ZBTB49Q6ZSB9 765 aa13.63□□□□□ -0.23
LSM4-206ENST00000600289 KRT74Q7RTS7 529 aa13.63□□□□□ -0.23
LSM4-206ENST00000600289 CSNK2A3Q8NEV1 391 aa13.63□□□□□ -0.23
LSM4-206ENST00000600289 RDH12Q96NR8 316 aa13.63□□□□□ -0.23
LSM4-206ENST00000600289 SLC29A1Q99808 456 aa13.63□□□□□ -0.23
LSM4-206ENST00000600289 ADAT1Q9BUB4 502 aaKnown RBP13.63□□□□□ -0.23
LSM4-206ENST00000600289 ZNF665Q9H7R5 613 aa13.63□□□□□ -0.23
LSM4-206ENST00000600289 MOB1AQ9H8S9 216 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms