RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 TMEM99Q8N816 258 aa18.44■□□□□ 0.54
UPF1-207ENST00000599848 A0A0B4J2A0 478 aa18.44■□□□□ 0.54
UPF1-207ENST00000599848 KLK8O60259 260 aa18.44■□□□□ 0.54
UPF1-207ENST00000599848 LSAMPQ13449 338 aa18.44■□□□□ 0.54
UPF1-207ENST00000599848 ANKRD36CQ5JPF3 1778 aa18.44■□□□□ 0.54
UPF1-207ENST00000599848 NHLRC2Q8NBF2 726 aa18.44■□□□□ 0.54
UPF1-207ENST00000599848 VSTM2AQ8TAG5 236 aa18.44■□□□□ 0.54
UPF1-207ENST00000599848 ALKBH3Q96Q83 286 aaPredicted RBP18.44■□□□□ 0.54
UPF1-207ENST00000599848 SHPKQ9UHJ6 478 aa18.44■□□□□ 0.54
UPF1-207ENST00000599848 IGHV3-15A0A0B4J1V0 119 aa18.44■□□□□ 0.54
UPF1-207ENST00000599848 SLC51BQ86UW2 128 aa18.44■□□□□ 0.54
UPF1-207ENST00000599848 OR4C3Q8NH37 302 aa18.44■□□□□ 0.54
UPF1-207ENST00000599848 OR5B3Q8NH48 314 aa18.44■□□□□ 0.54
UPF1-207ENST00000599848 SIGLEC11Q96RL6 698 aa18.44■□□□□ 0.54
UPF1-207ENST00000599848 PKMYT1Q99640 499 aa18.44■□□□□ 0.54
UPF1-207ENST00000599848 PLEKHA2Q9HB19 425 aa18.44■□□□□ 0.54
UPF1-207ENST00000599848 FOXJ3Q9UPW0 622 aa18.44■□□□□ 0.54
UPF1-207ENST00000599848 BTAF1O14981 1849 aa18.44■□□□□ 0.54
UPF1-207ENST00000599848 KCNE1BA0A087WTH5 132 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 OR5B21A6NL26 309 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 TESK1Q15569 626 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 BAGE3Q86Y29 109 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 BAGE2Q86Y30 109 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 SPICQ8N5J4 248 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 ZNF441Q8N8Z8 693 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 PCYT1BQ9Y5K3 369 aaPredicted RBP18.43■□□□□ 0.54
UPF1-207ENST00000599848 PNLIPP16233 465 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 AVPR2P30518 371 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 PHYHD1Q5SRE7 291 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 UBTD1Q9HAC8 227 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 MTCH2Q9Y6C9 303 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 ZBTB25P24278 435 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 DESI1Q6ICB0 168 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 PARP16Q8N5Y8 322 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 GON7Q9BXV9 100 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 OCEL1Q9H607 264 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 A4GNTQ9UNA3 340 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 KIF13AQ9H1H9 1805 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 A0A0A6YYD5 115 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 TBX19O60806 448 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 FUT3P21217 361 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 VASH2Q86V25 355 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 OR4F17Q8NGA8 305 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 OR4F5Q8NH21 305 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 OR4F4Q96R69 305 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 TMEM147Q9BVK8 224 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 SF3B5Q9BWJ5 86 aaKnown RBP18.43■□□□□ 0.54
UPF1-207ENST00000599848 B9D1Q9UPM9 204 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 RGPD1P0DJD0 1748 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 C5P01031 1676 aa18.43■□□□□ 0.54
UPF1-207ENST00000599848 B4E171 279 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 TIPARPQ7Z3E1 657 aaKnown RBP18.42■□□□□ 0.54
UPF1-207ENST00000599848 CHAC2Q8WUX2 184 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 GOLT1BQ9Y3E0 138 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 LGALS7P47929 136 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 HNRNPFP52597 415 aaKnown RBP18.42■□□□□ 0.54
UPF1-207ENST00000599848 STPG1Q5TH74 334 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 PNPLA5Q7Z6Z6 429 aaPredicted RBP18.42■□□□□ 0.54
UPF1-207ENST00000599848 OR2G3Q8NGZ4 309 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 OR5R1Q8NH85 324 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 ACOXLQ9NUZ1 547 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 E5RGE8 158 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 ORM1P02763 201 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 OR5I1Q13606 314 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 RPL7L1Q6DKI1 246 aaKnown RBP18.42■□□□□ 0.54
UPF1-207ENST00000599848 KIAA0100Q14667 2235 aaKnown RBP18.42■□□□□ 0.54
UPF1-207ENST00000599848 NKX2-2O95096 273 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 ALOX5APP20292 161 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 TGM1P22735 817 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 SOX8P57073 446 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 MED9Q9NWA0 146 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 TAAR3PQ9P1P4 343 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 YTHDF2Q9Y5A9 579 aaKnown RBP18.42■□□□□ 0.54
UPF1-207ENST00000599848 MPC1Q9Y5U8 109 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 M0QYG6 137 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 JTBO76095 146 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 ZNF121P58317 390 aaPredicted RBP18.42■□□□□ 0.54
UPF1-207ENST00000599848 SUMF1Q8NBK3 374 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 CCL17Q92583 94 aa18.42■□□□□ 0.54
UPF1-207ENST00000599848 ZNF707Q96C28 371 aaPredicted RBP18.42■□□□□ 0.54
UPF1-207ENST00000599848 GFRA3O60609 400 aa18.41■□□□□ 0.54
UPF1-207ENST00000599848 FGF2P09038 288 aa18.41■□□□□ 0.54
UPF1-207ENST00000599848 SLC38A6Q8IZM9 456 aa18.41■□□□□ 0.54
UPF1-207ENST00000599848 AQP7P3A6NL99 342 aa18.41■□□□□ 0.54
UPF1-207ENST00000599848 CISD3P0C7P0 127 aa18.41■□□□□ 0.54
UPF1-207ENST00000599848 AKR1C3P42330 323 aa18.41■□□□□ 0.54
UPF1-207ENST00000599848 BTNL8Q6UX41 500 aa18.41■□□□□ 0.54
UPF1-207ENST00000599848 NANOGP1Q8N7R0 232 aa18.41■□□□□ 0.54
UPF1-207ENST00000599848 HSD17B11Q8NBQ5 300 aa18.41■□□□□ 0.54
UPF1-207ENST00000599848 CXCL16Q9H2A7 254 aa18.41■□□□□ 0.54
UPF1-207ENST00000599848 KRBA1A5PL33 1030 aa18.41■□□□□ 0.54
UPF1-207ENST00000599848 TAF9Q16594 264 aa18.41■□□□□ 0.54
UPF1-207ENST00000599848 SLC25A30Q5SVS4 291 aa18.41■□□□□ 0.54
UPF1-207ENST00000599848 DNAJC5GQ8N7S2 189 aa18.41■□□□□ 0.54
UPF1-207ENST00000599848 METTL17Q9H7H0 456 aaPredicted RBP18.41■□□□□ 0.54
UPF1-207ENST00000599848 NPAP1Q9NZP6 1156 aa18.41■□□□□ 0.54
UPF1-207ENST00000599848 TSTD3H0UI37 97 aa18.41■□□□□ 0.54
UPF1-207ENST00000599848 CCL21O00585 134 aa18.41■□□□□ 0.54
UPF1-207ENST00000599848 OR7C2O60412 319 aa18.41■□□□□ 0.54
UPF1-207ENST00000599848 NDUFA6P56556 154 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms