RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 PNMA8CA0A1B0GUJ8 204 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 PLPP2O43688 288 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 ANXA2P07355 339 aaKnown RBP12.88□□□□□ -0.35
TRIM28-207ENST00000597136 ANOS1P23352 680 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 LIPAP38571 399 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 KIR3DL2P43630 455 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 GPR50Q13585 617 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 BLMHQ13867 455 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 TSTQ16762 297 aaKnown RBP12.88□□□□□ -0.35
TRIM28-207ENST00000597136 WDR38Q5JTN6 314 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 LIPKQ5VXJ0 399 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 FAM57BQ71RH2 274 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 PHC2Q8IXK0 858 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 MUC15Q8N387 334 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 NUP37Q8NFH4 326 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 UFD1Q92890 307 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 SMIM19Q96E16 107 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 TRAF4Q9BUZ4 470 aaPredicted RBP12.88□□□□□ -0.35
TRIM28-207ENST00000597136 C1QTNF5Q9BXJ0 243 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 PBOV1Q9GZY1 135 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 NUFIP1Q9UHK0 495 aaKnown RBP12.88□□□□□ -0.35
TRIM28-207ENST00000597136 FZR1Q9UM11 496 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 GTF2A1LQ9UNN4 478 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 SLC22A13Q9Y226 551 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 N6AMT1Q9Y5N5 214 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 HIVEP1P15822 2718 aa12.88□□□□□ -0.35
TRIM28-207ENST00000597136 DYSFO75923 2080 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 C5orf63A6NC05 138 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 OR4C45A6NMZ5 311 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 OR4A8P0C604 315 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 GLRXP35754 106 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 CDKN1AP38936 164 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 RGS6P49758 472 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 UCP2P55851 309 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 SSX1Q16384 188 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 BCL2L15Q5TBC7 163 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 C11orf71Q6IPW1 123 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 ZNF544Q6NX49 715 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 ARL9Q6T311 187 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 COLCA1Q6ZS62 124 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 DTX2Q86UW9 622 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 LRP11Q86VZ4 500 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 ELMOD2Q8IZ81 293 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 FBXL14Q8N1E6 418 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 OR13F1Q8NGS4 319 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 GHSRQ92847 366 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 PDCD1LG2Q9BQ51 273 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 MOB1AQ9H8S9 216 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 ZNF319Q9P2F9 582 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 ZANQ9Y493 2812 aa12.87□□□□□ -0.35
TRIM28-207ENST00000597136 OVOL3O00110 214 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 CCRL2O00421 344 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 NDUFS7O75251 213 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 ZFPL1O95159 310 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 LCATP04180 440 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 CD1AP06126 327 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 SERPINF1P36955 418 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 SLC3A1Q07837 685 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 SWI5Q1ZZU3 235 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 OR8B12Q8NGG6 310 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 OR52H1Q8NGJ2 320 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 PGAM5Q96HS1 289 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 PGLYRP3Q96LB9 341 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 POFUT1Q9H488 388 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 SP140LQ9H930 580 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 CR1P17927 2039 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 TMEM212A6NML5 194 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 ICMTO60725 284 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 TTRP02766 147 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 PCSK6P29122 969 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 TGFBR2P37173 567 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 DEFB113Q30KQ7 82 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 SNAI3Q3KNW1 292 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 SPATA46Q5T0L3 261 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 AGAP6Q5VW22 663 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 RFPL4BQ6ZWI9 263 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 GPR141Q7Z602 305 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 OR5AK2Q8NH90 309 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 NINJ1Q92982 152 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 PIGTQ969N2 578 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 APOBEC3DQ96AK3 386 aaPredicted RBP12.86□□□□□ -0.35
TRIM28-207ENST00000597136 MRPL37Q9BZE1 423 aaKnown RBP12.86□□□□□ -0.35
TRIM28-207ENST00000597136 OR10A2Q9H208 303 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 ZNF442Q9H7R0 627 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 CBLN4Q9NTU7 201 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 TBCCD1Q9NVR7 557 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 NDUFB11Q9NX14 153 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 MYEF2Q9P2K5 600 aaKnown RBP12.86□□□□□ -0.35
TRIM28-207ENST00000597136 EIF3KQ9UBQ5 218 aaKnown RBP12.86□□□□□ -0.35
TRIM28-207ENST00000597136 SPEF1Q9Y4P9 236 aa12.86□□□□□ -0.35
TRIM28-207ENST00000597136 TEP1Q99973 2627 aaKnown RBP12.85□□□□□ -0.35
TRIM28-207ENST00000597136 TBX1O43435 398 aa12.85□□□□□ -0.35
TRIM28-207ENST00000597136 SMPD2O60906 423 aa12.85□□□□□ -0.35
TRIM28-207ENST00000597136 CD36P16671 472 aa12.85□□□□□ -0.35
TRIM28-207ENST00000597136 ODF4Q2M2E3 257 aa12.85□□□□□ -0.35
TRIM28-207ENST00000597136 TMEM255AQ5JRV8 349 aa12.85□□□□□ -0.35
TRIM28-207ENST00000597136 SATL1Q86VE3 508 aa12.85□□□□□ -0.35
TRIM28-207ENST00000597136 RDH10Q8IZV5 341 aa12.85□□□□□ -0.35
TRIM28-207ENST00000597136 ZCCHC24Q8N2G6 241 aaKnown RBP12.85□□□□□ -0.35
TRIM28-207ENST00000597136 ZNF676Q8N7Q3 588 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms