RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 SAMD5Q5TGI4 173 aa8.19□□□□□ -1.1
LIG1-209ENST00000596104 DUX4L9Q6RFH8 374 aaPredicted RBP8.19□□□□□ -1.1
LIG1-209ENST00000596104 SMARCD3Q6STE5 483 aa8.19□□□□□ -1.1
LIG1-209ENST00000596104 Q6ZPA2 131 aa8.19□□□□□ -1.1
LIG1-209ENST00000596104 VMO1Q7Z5L0 202 aa8.19□□□□□ -1.1
LIG1-209ENST00000596104 ARPINQ7Z6K5 226 aa8.19□□□□□ -1.1
LIG1-209ENST00000596104 CYP4Z1Q86W10 505 aa8.19□□□□□ -1.1
LIG1-209ENST00000596104 OR2AE1Q8NHA4 323 aa8.19□□□□□ -1.1
LIG1-209ENST00000596104 RCN3Q96D15 328 aa8.19□□□□□ -1.1
LIG1-209ENST00000596104 ZNF799Q96GE5 643 aa8.19□□□□□ -1.1
LIG1-209ENST00000596104 DHRS1Q96LJ7 313 aa8.19□□□□□ -1.1
LIG1-209ENST00000596104 ERMAPQ96PL5 475 aaPredicted RBP8.19□□□□□ -1.1
LIG1-209ENST00000596104 MRPL22Q9NWU5 206 aaKnown RBP8.19□□□□□ -1.1
LIG1-209ENST00000596104 MRPL15Q9P015 296 aaKnown RBP8.19□□□□□ -1.1
LIG1-209ENST00000596104 NDUFAF4Q9P032 175 aa8.19□□□□□ -1.1
LIG1-209ENST00000596104 DUX4Q9UBX2 424 aa8.19□□□□□ -1.1
LIG1-209ENST00000596104 AP3M1Q9Y2T2 418 aa8.19□□□□□ -1.1
LIG1-209ENST00000596104 FAM96BQ9Y3D0 163 aa8.19□□□□□ -1.1
LIG1-209ENST00000596104 IGHV3OR15-7A0A075B7D8 119 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 OR6C68A6NDL8 312 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 GGT3PA6NGU5 568 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 A6NLC8 198 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 HMGB1P1B2RPK0 211 aaPredicted RBP8.18□□□□□ -1.1
LIG1-209ENST00000596104 RNASEK-C17orf49H0YIS7 233 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.18□□□□□ -1.1
LIG1-209ENST00000596104 NME4O00746 187 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 RENP00797 406 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 OPN1MWP04001 364 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 GRPP07492 148 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 OPN1MW2P0DN77 364 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 OPN1MW3P0DN78 364 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 HIST1H1CP16403 213 aaKnown RBP8.18□□□□□ -1.1
LIG1-209ENST00000596104 TGFBR2P37173 567 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 PRB3Q04118 309 aaPredicted RBP8.18□□□□□ -1.1
LIG1-209ENST00000596104 PCK2Q16822 640 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 RFX4Q33E94 735 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 GLYATL3Q5SZD4 288 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 CGB2Q6NT52 195 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 WDR86Q86TI4 376 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 C11orf53Q8IXP5 236 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 Q8N7P7 452 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 SPERTQ8NA61 448 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 OR56B2PQ8NGI1 322 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 OR2AJ1Q8NGZ0 328 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 OR4K13Q8NH42 304 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 NPRL2Q8WTW4 380 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 ST8SIA4Q92187 359 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 TNFRSF14Q92956 283 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 C7orf34Q96L11 122 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 DMRTB1Q96MA1 342 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 OR52D1Q9H346 318 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 RPRD1BQ9NQG5 326 aaKnown RBP8.18□□□□□ -1.1
LIG1-209ENST00000596104 SIRT7Q9NRC8 400 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 ADA2Q9NZK5 511 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 KCNG2Q9UJ96 466 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 AURKCQ9UQB9 309 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 CAB39Q9Y376 341 aaPredicted RBP8.18□□□□□ -1.1
LIG1-209ENST00000596104 DOCK11Q5JSL3 2073 aa8.18□□□□□ -1.1
LIG1-209ENST00000596104 hCG_1807616A0A1W2PRN6 198 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 BTBD17A6NE02 478 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 BHLHE40O14503 412 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 NPFFO15130 113 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 ALX3O95076 343 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 PRB2P02812 416 aaPredicted RBP8.17□□□□□ -1.1
LIG1-209ENST00000596104 PSKH1P11801 424 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 RHCEP18577 417 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 AMY2BP19961 511 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 SLC6A6P31641 620 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 RPS27P42677 84 aaKnown RBP8.17□□□□□ -1.1
LIG1-209ENST00000596104 GSK3BP49841 420 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 SLC7A2P52569 658 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 DLX1P56177 255 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 SF3A3Q12874 501 aaKnown RBP eCLIP8.17□□□□□ -1.11e-7■■■■□ 19.8
LIG1-209ENST00000596104 WDR38Q5JTN6 314 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 SLC35E4Q6ICL7 350 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 C8orf82Q6P1X6 216 aaPredicted RBP8.17□□□□□ -1.1
LIG1-209ENST00000596104 DRAM2Q6UX65 266 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 GALNT4Q8N4A0 578 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 FANK1Q8TC84 345 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 SPTSSAQ969W0 71 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 SEH1LQ96EE3 360 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 CCL13Q99616 98 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 FN3KQ9H479 309 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 RNPEPL1Q9HAU8 725 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 ONECUT1Q9UBC0 465 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 FBLN5Q9UBX5 448 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 CAPN7Q9Y6W3 813 aa8.17□□□□□ -1.1
LIG1-209ENST00000596104 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.16□□□□□ -1.1
LIG1-209ENST00000596104 A0A1W2PRD5 423 aa8.16□□□□□ -1.1
LIG1-209ENST00000596104 A0A1W2PRF3 423 aa8.16□□□□□ -1.1
LIG1-209ENST00000596104 A0A1W2PRM7 423 aa8.16□□□□□ -1.1
LIG1-209ENST00000596104 ACOT8O14734 319 aa8.16□□□□□ -1.1
LIG1-209ENST00000596104 GSTA4O15217 222 aa8.16□□□□□ -1.1
LIG1-209ENST00000596104 GPR37O15354 613 aa8.16□□□□□ -1.1
LIG1-209ENST00000596104 DIRAS1O95057 198 aa8.16□□□□□ -1.1
LIG1-209ENST00000596104 HLA-DQA2P01906 255 aa8.16□□□□□ -1.1
LIG1-209ENST00000596104 TROVE2P10155 538 aaKnown RBP eCLIP8.16□□□□□ -1.1
LIG1-209ENST00000596104 MUC1P15941 1255 aaPredicted RBP8.16□□□□□ -1.1
LIG1-209ENST00000596104 NCK1P16333 377 aa8.16□□□□□ -1.1
LIG1-209ENST00000596104 GABRA5P31644 462 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms