RNA–Protein interactions for RNA: ENST00000570139.1

CNOT1-222, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 2

Gene CNOT1, Length 458 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-222	ENST00000570139	ASCL2	Q99929	193 aa		6.15	□□□□□ -1.42
CNOT1-222	ENST00000570139	COPS4	Q9BT78	406 aa		6.15	□□□□□ -1.42
CNOT1-222	ENST00000570139	PLA2G12A	Q9BZM1	189 aa		6.15	□□□□□ -1.42
CNOT1-222	ENST00000570139	DSN1	Q9H410	356 aa		6.15	□□□□□ -1.42
CNOT1-222	ENST00000570139	MCCC2	Q9HCC0	563 aa		6.15	□□□□□ -1.42
CNOT1-222	ENST00000570139	FANCF	Q9NPI8	374 aa		6.15	□□□□□ -1.42
CNOT1-222	ENST00000570139	FAM212B	Q9NTI7	297 aa	Predicted RBP	6.15	□□□□□ -1.42
CNOT1-222	ENST00000570139	FKBP14	Q9NWM8	211 aa		6.15	□□□□□ -1.42
CNOT1-222	ENST00000570139	DCAF16	Q9NXF7	216 aa		6.15	□□□□□ -1.42
CNOT1-222	ENST00000570139	MRPL39	Q9NYK5	338 aa	Known RBP	6.15	□□□□□ -1.42
CNOT1-222	ENST00000570139	ZNF226	Q9NYT6	803 aa		6.15	□□□□□ -1.42
CNOT1-222	ENST00000570139	TVP23B	Q9NYZ1	205 aa		6.15	□□□□□ -1.42
CNOT1-222	ENST00000570139	MED11	Q9P086	117 aa		6.15	□□□□□ -1.42
CNOT1-222	ENST00000570139	WARS2	Q9UGM6	360 aa	Known RBP	6.15	□□□□□ -1.42
CNOT1-222	ENST00000570139	PSORS1C1	Q9UIG5	152 aa		6.15	□□□□□ -1.42
CNOT1-222	ENST00000570139	TRAPPC4	Q9Y296	219 aa		6.15	□□□□□ -1.42
CNOT1-222	ENST00000570139	DMRT1	Q9Y5R6	373 aa		6.15	□□□□□ -1.42
CNOT1-222	ENST00000570139	SEC16A	O15027	2179 aa		6.15	□□□□□ -1.43
CNOT1-222	ENST00000570139	PCSK5	Q92824	1860 aa		6.15	□□□□□ -1.43
CNOT1-222	ENST00000570139		A0A1W2PNV4	684 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	TMEM72	A0PK05	275 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	TRABD2B	A6NFA1	517 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	ARGFX	A6NJG6	315 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	PRR23D1	E9PI22	279 aa	Predicted RBP	6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	PRRG2	O14669	202 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	TNFRSF13B	O14836	293 aa	Predicted RBP	6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	TLX2	O43763	284 aa	Predicted RBP	6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	EIF1B	O60739	113 aa	Known RBP	6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	SCGB2A1	O75556	95 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	KDM4B	O94953	1096 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	FADS2	O95864	444 aa	Known RBP	6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	TXNDC12	O95881	172 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	IGHM	P01871	453 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	CD14	P08571	375 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	PRR23D2	P0DMB1	279 aa	Predicted RBP	6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	NR2C1	P13056	603 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	DPP4	P27487	766 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	RPL4	P36578	427 aa	Known RBP	6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	BLVRA	P53004	296 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	CDH11	P55287	796 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	SH3BGR	P55822	239 aa	Predicted RBP	6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	FXYD6P3	P58550	94 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	LGALS3BP	Q08380	585 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	ZP4	Q12836	540 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	OR1C1	Q15619	314 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	TOMM34	Q15785	309 aa	Predicted RBP	6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	ZNF239	Q16600	458 aa	Known RBP	6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	ODF3L2	Q3SX64	289 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	SLC35D3	Q5M8T2	416 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	CLEC12A	Q5QGZ9	265 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	PRAMEF20	Q5VT98	475 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	TMEM236	Q5W0B7	351 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	ACSM5	Q6NUN0	579 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	PCSK4	Q6UW60	755 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	ASB18	Q6ZVZ8	466 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	STX19	Q8N4C7	294 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	NANOGP1	Q8N7R0	232 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	OR56B1	Q8NGI3	324 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	OR4Q3	Q8NH05	313 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	OR51A7	Q8NH64	312 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	HAS2	Q92819	552 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	ZHX1-C8orf76	Q96EF9	292 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	MRPL48	Q96GC5	212 aa	Known RBP	6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	LRR1	Q96L50	414 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	IL4I1	Q96RQ9	567 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	TRAF4	Q9BUZ4	470 aa	Predicted RBP	6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	CDCA4	Q9BXL8	241 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	OR2B2	Q9GZK3	357 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	INPP5E	Q9NRR6	644 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	GPR83	Q9NYM4	423 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	VDAC3	Q9Y277	283 aa		6.14	□□□□□ -1.43
CNOT1-222	ENST00000570139	DMXL1	Q9Y485	3027 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	TRAV27	A0A087WT01	109 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139		A0A1W2PRG6	482 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139		A6NIZ1	184 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	FTCDNL1	E5RQL4	147 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	ZNF701	M0R085	212 aa	Predicted RBP	6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	XKRY	O14609	159 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	PRKY	O43930	277 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	NME2P1	O60361	137 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	ENTPD6	O75354	484 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	CEACAM4	O75871	244 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	VAMP5	O95183	116 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	PMS2P2	O95744	297 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	RAB36	O95755	333 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	HPN	P05981	417 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	CDK1	P06493	297 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	SP1	P08047	785 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	DBT	P11182	482 aa	Known RBP	6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	PRF1	P14222	555 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	MYL12A	P19105	171 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	DCK	P27707	260 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	HTR1F	P30939	366 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	FMO3	P31513	532 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	SFTPD	P35247	375 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	RPS5	P46782	204 aa	Known RBP	6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	OR3A3	P47888	321 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	ALDH3B2	P48448	385 aa		6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	DAP3	P51398	398 aa	Known RBP	6.13	□□□□□ -1.43
CNOT1-222	ENST00000570139	SLC25A1	P53007	311 aa		6.13	□□□□□ -1.43

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms