RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ERVK-18Q9QC07 812 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 CTSZQ9UBR2 303 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 ARL2BPQ9Y2Y0 163 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 POM121CA8CG34 1229 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 C3orf80F5H4A9 247 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 LGALS8O00214 317 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 WIPF1O43516 503 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 CCNB2O95067 398 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 GYPBP06028 91 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 SPARCP09486 303 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 PRKXP51817 358 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 PPP1R8Q12972 351 aaKnown RBP13.36□□□□□ -0.27
CLN3-229ENST00000567963 CRMP1Q14194 572 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 OR8B8Q15620 311 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 DEFB112Q30KQ8 113 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 TEX30Q5JUR7 227 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 CD276Q5ZPR3 534 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 BOLLQ8N9W6 283 aaKnown RBP13.36□□□□□ -0.27
CLN3-229ENST00000567963 SPERTQ8NA61 448 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 AQP11Q8NBQ7 271 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 TECTBQ96PL2 329 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 NMNAT2Q9BZQ4 307 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 CENPMQ9NSP4 180 aa13.36□□□□□ -0.27
CLN3-229ENST00000567963 MEGF8Q7Z7M0 2845 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 TRAV38-1A0A0B4J264 116 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 TCRBV5S2A0A599 114 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 HOXA3O43365 443 aaPredicted RBP13.35□□□□□ -0.27
CLN3-229ENST00000567963 NDUFA2O43678 99 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 DCTN3O75935 186 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 LIPFP07098 398 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 CLUP10909 449 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 SLC2A1P11166 492 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 SPI1P17947 270 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 ATP6V1B2P21281 511 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 SLC25A1P53007 311 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 GYS2P54840 703 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 TAF13Q15543 124 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 GPR157Q5UAW9 335 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 OR2T33Q8NG76 320 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 OR56B2PQ8NGI1 322 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 SPSB4Q96A44 273 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 PCGF1Q9BSM1 259 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 OPA3Q9H6K4 179 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 TRIM36Q9NQ86 728 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 C1orf123Q9NWV4 160 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 BAIAP2Q9UQB8 552 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 N6AMT1Q9Y5N5 214 aa13.35□□□□□ -0.27
CLN3-229ENST00000567963 OOEPA6NGQ2 149 aa13.34□□□□□ -0.27
CLN3-229ENST00000567963 ZNF879B4DU55 563 aa13.34□□□□□ -0.27
CLN3-229ENST00000567963 ZNF878C9JN71 531 aa13.34□□□□□ -0.27
CLN3-229ENST00000567963 ADAM20O43506 726 aa13.34□□□□□ -0.27
CLN3-229ENST00000567963 XRCC2O43543 280 aa13.34□□□□□ -0.27
CLN3-229ENST00000567963 LHBP01229 141 aa13.34□□□□□ -0.27
CLN3-229ENST00000567963 GRPP07492 148 aa13.34□□□□□ -0.27
CLN3-229ENST00000567963 MZT1Q08AG7 82 aa13.34□□□□□ -0.27
CLN3-229ENST00000567963 MICAQ29983 383 aa13.34□□□□□ -0.27
CLN3-229ENST00000567963 ZNF826PQ6ZT77 177 aa13.34□□□□□ -0.27
CLN3-229ENST00000567963 GCSAMQ8N6F7 178 aa13.34□□□□□ -0.27
CLN3-229ENST00000567963 OR4Q3Q8NH05 313 aa13.34□□□□□ -0.27
CLN3-229ENST00000567963 ZDHHC16Q969W1 377 aa13.34□□□□□ -0.27
CLN3-229ENST00000567963 TMIGD2Q96BF3 282 aa13.34□□□□□ -0.27
CLN3-229ENST00000567963 DGCR6LQ9BY27 220 aa13.34□□□□□ -0.27
CLN3-229ENST00000567963 MAGIXQ9H6Y5 334 aa13.34□□□□□ -0.27
CLN3-229ENST00000567963 U3KQV3 271 aa13.34□□□□□ -0.27
CLN3-229ENST00000567963 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.33□□□□□ -0.28
CLN3-229ENST00000567963 DHRS12A0PJE2 317 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 SRRM5B3KS81 715 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 TOX4O94842 621 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 SOX14O95416 240 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 SFTPBP07988 381 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 MMP9P14780 707 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 MDKP21741 143 aaPredicted RBP13.33□□□□□ -0.28
CLN3-229ENST00000567963 CFHR2P36980 270 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 DDOSTP39656 456 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 SLC15A1P46059 708 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 MNAT1P51948 309 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 BLVRAP53004 296 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 GNGT1P63211 74 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 Q6YL49 198 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 SPATC1Q76KD6 591 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 PNLDC1Q8NA58 520 aaKnown RBP13.33□□□□□ -0.28
CLN3-229ENST00000567963 OR6K6Q8NGW6 343 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 SLITRK2Q9H156 845 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 RASSF4Q9H2L5 321 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 SMURF1Q9HCE7 757 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 NOX4Q9NPH5 578 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 ARMC1Q9NVT9 282 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 C14orf119Q9NWQ9 140 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 VNN3Q9NY84 501 aa13.33□□□□□ -0.28
CLN3-229ENST00000567963 CENPVL3A0A0U1RRI6 287 aa13.32□□□□□ -0.28
CLN3-229ENST00000567963 A6NLC8 198 aa13.32□□□□□ -0.28
CLN3-229ENST00000567963 B2RBV5 119 aa13.32□□□□□ -0.28
CLN3-229ENST00000567963 P2RY10O00398 339 aa13.32□□□□□ -0.28
CLN3-229ENST00000567963 GYPAP02724 150 aa13.32□□□□□ -0.28
CLN3-229ENST00000567963 OMGP23515 440 aa13.32□□□□□ -0.28
CLN3-229ENST00000567963 CX3CR1P49238 355 aa13.32□□□□□ -0.28
CLN3-229ENST00000567963 GRB2P62993 217 aaKnown RBP13.32□□□□□ -0.28
CLN3-229ENST00000567963 FAM3AP98173 230 aa13.32□□□□□ -0.28
CLN3-229ENST00000567963 LINC01590Q5TEZ4 76 aa13.32□□□□□ -0.28
CLN3-229ENST00000567963 TEX36Q5VZQ5 186 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms