RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 TECTBQ96PL2 329 aa15.8■□□□□ 0.12
VPS35-202ENST00000561713 NUDT16L1Q9BRJ7 211 aaKnown RBP15.8■□□□□ 0.12
VPS35-202ENST00000561713 MED20Q9H944 212 aa15.8■□□□□ 0.12
VPS35-202ENST00000561713 CENPMQ9NSP4 180 aa15.8■□□□□ 0.12
VPS35-202ENST00000561713 ACTR3BQ9P1U1 418 aa15.8■□□□□ 0.12
VPS35-202ENST00000561713 ATP8B1O43520 1251 aa15.79■□□□□ 0.12
VPS35-202ENST00000561713 KRT36O76013 467 aa15.79■□□□□ 0.12
VPS35-202ENST00000561713 SPI1P17947 270 aa15.79■□□□□ 0.12
VPS35-202ENST00000561713 OTX1P32242 354 aaPredicted RBP15.79■□□□□ 0.12
VPS35-202ENST00000561713 ENTPD1P49961 510 aa15.79■□□□□ 0.12
VPS35-202ENST00000561713 FGF12P61328 243 aa15.79■□□□□ 0.12
VPS35-202ENST00000561713 RUSC1-AS1Q66K80 236 aa15.79■□□□□ 0.12
VPS35-202ENST00000561713 C16orf87Q6PH81 154 aa15.79■□□□□ 0.12
VPS35-202ENST00000561713 LRRN1Q6UXK5 716 aa15.79■□□□□ 0.12
VPS35-202ENST00000561713 DCDC5Q6ZRR9 648 aa15.79■□□□□ 0.12
VPS35-202ENST00000561713 RASSF6Q6ZTQ3 369 aa15.79■□□□□ 0.12
VPS35-202ENST00000561713 FITM2Q8N6M3 262 aa15.79■□□□□ 0.12
VPS35-202ENST00000561713 NDE1Q9NXR1 346 aa15.79■□□□□ 0.12
VPS35-202ENST00000561713 IL20Q9NYY1 176 aa15.79■□□□□ 0.12
VPS35-202ENST00000561713 PDP1Q9P0J1 537 aaPredicted RBP15.79■□□□□ 0.12
VPS35-202ENST00000561713 SAMHD1Q9Y3Z3 626 aaKnown RBP15.79■□□□□ 0.12
VPS35-202ENST00000561713 A6NLC8 198 aa15.78■□□□□ 0.12
VPS35-202ENST00000561713 PHYHO14832 338 aa15.78■□□□□ 0.12
VPS35-202ENST00000561713 PLATP00750 562 aa15.78■□□□□ 0.12
VPS35-202ENST00000561713 TAF13Q15543 124 aa15.78■□□□□ 0.12
VPS35-202ENST00000561713 ZNF841Q6ZN19 808 aa15.78■□□□□ 0.12
VPS35-202ENST00000561713 CELF2-AS1Q8N7Q2 184 aa15.78■□□□□ 0.12
VPS35-202ENST00000561713 CCDC124Q96CT7 223 aaKnown RBP15.78■□□□□ 0.12
VPS35-202ENST00000561713 TRIM15Q9C019 465 aa15.78■□□□□ 0.12
VPS35-202ENST00000561713 FN3KRPQ9HA64 309 aa15.78■□□□□ 0.12
VPS35-202ENST00000561713 SMURF1Q9HCE7 757 aa15.78■□□□□ 0.12
VPS35-202ENST00000561713 TNFRSF19Q9NS68 423 aa15.78■□□□□ 0.12
VPS35-202ENST00000561713 C1orf123Q9NWV4 160 aa15.78■□□□□ 0.12
VPS35-202ENST00000561713 MMP24Q9Y5R2 645 aa15.78■□□□□ 0.12
VPS35-202ENST00000561713 IGHV3OR15-7A0A075B7D8 119 aa15.77■□□□□ 0.12
VPS35-202ENST00000561713 hCG_1807616A0A1W2PRN6 198 aa15.77■□□□□ 0.12
VPS35-202ENST00000561713 FAM183AA6NL82 134 aa15.77■□□□□ 0.12
VPS35-202ENST00000561713 B2RBV5 119 aa15.77■□□□□ 0.12
VPS35-202ENST00000561713 HOXA3O43365 443 aaPredicted RBP15.77■□□□□ 0.12
VPS35-202ENST00000561713 TBX1O43435 398 aa15.77■□□□□ 0.12
VPS35-202ENST00000561713 SFTPBP07988 381 aa15.77■□□□□ 0.12
VPS35-202ENST00000561713 PPIAL4GP0DN37 164 aa15.77■□□□□ 0.12
VPS35-202ENST00000561713 HMGA2P52926 109 aa15.77■□□□□ 0.12
VPS35-202ENST00000561713 ELF3P78545 371 aaPredicted RBP15.77■□□□□ 0.12
VPS35-202ENST00000561713 POU4F2Q12837 409 aa15.77■□□□□ 0.12
VPS35-202ENST00000561713 OR8B8Q15620 311 aa15.77■□□□□ 0.12
VPS35-202ENST00000561713 OCLNQ16625 522 aa15.77■□□□□ 0.12
VPS35-202ENST00000561713 LCN8Q6JVE9 175 aa15.77■□□□□ 0.12
VPS35-202ENST00000561713 DRAM2Q6UX65 266 aa15.77■□□□□ 0.12
VPS35-202ENST00000561713 KIR3DL3Q8N743 410 aa15.77■□□□□ 0.12
VPS35-202ENST00000561713 NMNAT2Q9BZQ4 307 aa15.77■□□□□ 0.12
VPS35-202ENST00000561713 REEP1Q9H902 201 aa15.77■□□□□ 0.12
VPS35-202ENST00000561713 DNAJC27Q9NZQ0 273 aa15.77■□□□□ 0.12
VPS35-202ENST00000561713 RNF7Q9UBF6 113 aa15.77■□□□□ 0.12
VPS35-202ENST00000561713 DHRS12A0PJE2 317 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 ZNF878C9JN71 531 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 ZNF593O00488 134 aaPredicted RBP15.76■□□□□ 0.11
VPS35-202ENST00000561713 ADAM20O43506 726 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 ANXA2P07355 339 aaKnown RBP15.76■□□□□ 0.11
VPS35-202ENST00000561713 GRPP07492 148 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 FMO3P31513 532 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 CX3CR1P49238 355 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 MS4A2Q01362 244 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 EIF2B1Q14232 305 aaKnown RBP15.76■□□□□ 0.11
VPS35-202ENST00000561713 DEFB112Q30KQ8 113 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 GFOD2Q3B7J2 385 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 OR2T5Q6IEZ7 315 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 WDR86Q86TI4 376 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 FGFRL1Q8N441 504 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 OR2T33Q8NG76 320 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 OR10G2Q8NGC3 310 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 OR6N2Q8NGY6 317 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 OR2T29Q8NH02 315 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 WFDC12Q8WWY7 111 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 OTULINQ96BN8 352 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 CLPTM1LQ96KA5 538 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 AMELYQ99218 206 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 KCNJ15Q99712 375 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 NIPSNAP1Q9BPW8 284 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 PCGF1Q9BSM1 259 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 RASSF4Q9H2L5 321 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 PPP1R3EQ9H7J1 279 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 TAS2R1Q9NYW7 299 aa15.76■□□□□ 0.11
VPS35-202ENST00000561713 KIR2DS1A0A191URI9 304 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 A0A1B0GW55 424 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 FAM181BA6NEQ2 426 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 RIIAD1A6NNX1 92 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 LGALS8O00214 317 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 ENSAO43768 121 aaKnown RBP15.75■□□□□ 0.11
VPS35-202ENST00000561713 FCN3O75636 299 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 KNG1P01042 644 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 GYPAP02724 150 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 DUX4L2P0CJ85 424 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 DUX4L3P0CJ86 424 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 DUX4L4P0CJ87 422 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 DUX4L5P0CJ88 424 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 DUX4L6P0CJ89 424 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 DUX4L7P0CJ90 424 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 PSMB10P40306 273 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 SLC25A1P53007 311 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms