RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 PRSS35Q8N3Z0 413 aa4.47□□□□□ -1.69
RTF1-204ENST00000558117 DEFB108BQ8NET1 73 aa4.47□□□□□ -1.69
RTF1-204ENST00000558117 OR4L1Q8NH43 312 aa4.47□□□□□ -1.69
RTF1-204ENST00000558117 PNPT1Q8TCS8 783 aaKnown RBP4.47□□□□□ -1.69
RTF1-204ENST00000558117 LKAAEAR1Q8TD35 194 aa4.47□□□□□ -1.69
RTF1-204ENST00000558117 P3H4Q92791 437 aa4.47□□□□□ -1.69
RTF1-204ENST00000558117 MUCL1Q96DR8 90 aa4.47□□□□□ -1.69
RTF1-204ENST00000558117 RCHY1Q96PM5 261 aa4.47□□□□□ -1.69
RTF1-204ENST00000558117 EBNA1BP2Q99848 306 aaKnown RBP4.47□□□□□ -1.69
RTF1-204ENST00000558117 TMEM43Q9BTV4 400 aa4.47□□□□□ -1.69
RTF1-204ENST00000558117 FAM192AQ9GZU8 254 aa4.47□□□□□ -1.69
RTF1-204ENST00000558117 C16orf95Q9H693 158 aa4.47□□□□□ -1.69
RTF1-204ENST00000558117 PRTFDC1Q9NRG1 225 aa4.47□□□□□ -1.69
RTF1-204ENST00000558117 TNFRSF19Q9NS68 423 aa4.47□□□□□ -1.69
RTF1-204ENST00000558117 NDE1Q9NXR1 346 aa4.47□□□□□ -1.69
RTF1-204ENST00000558117 RNF14Q9UBS8 474 aa4.47□□□□□ -1.69
RTF1-204ENST00000558117 BCAP29Q9UHQ4 241 aa4.47□□□□□ -1.69
RTF1-204ENST00000558117 ARHGAP32A7KAX9 2087 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 IGHV3OR16-10A0A075B7F0 116 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 A0A087WZ39 114 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 E5RGE8 158 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 PPIAL4DF5H284 164 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 FCMRO60667 390 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 BCAS1O75363 584 aaPredicted RBP4.46□□□□□ -1.7
RTF1-204ENST00000558117 TXNDC12O95881 172 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 S100A9P06702 114 aaKnown RBP4.46□□□□□ -1.7
RTF1-204ENST00000558117 SLC35G6P0C7Q6 338 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 GP9P14770 177 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 AGTR1P30556 359 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 RPL4P36578 427 aaKnown RBP4.46□□□□□ -1.7
RTF1-204ENST00000558117 ZNF140P52738 457 aaPredicted RBP4.46□□□□□ -1.7
RTF1-204ENST00000558117 GEMP55040 296 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 EIF3EP60228 445 aaKnown RBP4.46□□□□□ -1.7
RTF1-204ENST00000558117 SKP1P63208 163 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 DHODHQ02127 395 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 BST1Q10588 318 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 EXOSC7Q15024 291 aaKnown RBP4.46□□□□□ -1.7
RTF1-204ENST00000558117 PCK2Q16822 640 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 NIPAL1Q6NVV3 410 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 ZNF620Q6ZNG0 422 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 PEX26Q7Z412 305 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 RNF10Q8N5U6 811 aaKnown RBP4.46□□□□□ -1.7
RTF1-204ENST00000558117 ANKFN1Q8N957 763 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 ZSCAN4Q8NAM6 433 aaPredicted RBP4.46□□□□□ -1.7
RTF1-204ENST00000558117 OR4S1Q8NGB4 309 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 TRMT10AQ8TBZ6 339 aaKnown RBP4.46□□□□□ -1.7
RTF1-204ENST00000558117 PINX1Q96BK5 328 aaKnown RBP4.46□□□□□ -1.7
RTF1-204ENST00000558117 ALS2CR12Q96Q35 445 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 ZNF665Q9H7R5 613 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 MTHFD2LQ9H903 347 aaPredicted RBP4.46□□□□□ -1.7
RTF1-204ENST00000558117 PARVAQ9NVD7 372 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 PRODH2Q9UF12 536 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 ANAPC7Q9UJX3 599 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 NSG2Q9Y328 171 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 MRPS18CQ9Y3D5 142 aaKnown RBP4.46□□□□□ -1.7
RTF1-204ENST00000558117 OR10H1Q9Y4A9 318 aa4.46□□□□□ -1.7
RTF1-204ENST00000558117 CCDC162PA2VCL2 907 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 OR5H1A6NKK0 313 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 A8MVM7 634 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 BTNL10A8MVZ5 291 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 B4DXG7 233 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 C4orf51C9J302 202 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 SLC1A7O00341 560 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 ARPC1BO15143 372 aaKnown RBP4.45□□□□□ -1.7
RTF1-204ENST00000558117 ARPC3O15145 178 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 SURF4O15260 269 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 ICOSLGO75144 302 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 CDH16O75309 829 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 LYZL6O75951 148 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 PROSCO94903 275 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 LHBP01229 141 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 HIST1H2AGP0C0S8 130 aaPredicted RBP4.45□□□□□ -1.7
RTF1-204ENST00000558117 OR56A5P0C7T3 313 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 PABPC4LP0CB38 370 aaKnown RBP4.45□□□□□ -1.7
RTF1-204ENST00000558117 SMIM10L1P0DMW3 83 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 COL8A2P25067 703 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 PTBP1P26599 531 aaKnown RBP eCLIP4.45□□□□□ -1.7
RTF1-204ENST00000558117 ATP4BP51164 291 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 CLDN17P56750 224 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 C2orf54Q08AI8 447 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 ITIH4Q14624 930 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 RBMY1FQ15415 496 aaKnown RBP4.45□□□□□ -1.7
RTF1-204ENST00000558117 LIPJQ5W064 366 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 NUFIP2Q7Z417 695 aaKnown RBP4.45□□□□□ -1.7
RTF1-204ENST00000558117 HIST2H2ABQ8IUE6 130 aaPredicted RBP4.45□□□□□ -1.7
RTF1-204ENST00000558117 UBE2J2Q8N2K1 259 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 METTL4Q8N3J2 472 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 RIBC1Q8N443 379 aaPredicted RBP4.45□□□□□ -1.7
RTF1-204ENST00000558117 MFSD9Q8NBP5 474 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 MNS1Q8NEH6 495 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 OR9K2Q8NGE7 335 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 OR4D10Q8NGI6 311 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 OR9A1PQ8NGU1 263 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 HIST1H2ACQ93077 130 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 COQ2Q96H96 371 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 SMIM10Q96HG1 83 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 S1PR3Q99500 378 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 C19orf43Q9BQ61 176 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 FUNDC2Q9BWH2 189 aa4.45□□□□□ -1.7
RTF1-204ENST00000558117 MEAF6Q9HAF1 191 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms