RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 DHHO43323 396 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 GMDSO60547 372 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 RAMP1O60894 148 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 CFDP00746 253 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-229ENST00000557348 SP1P08047 785 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 ADRB1P08588 477 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 RFPL3SP0C7P2 107 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 GABRA1P14867 456 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 AGTR1P30556 359 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 SOX2P48431 317 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 ZP1P60852 638 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 SEC61A1P61619 476 aaKnown RBP11.18□□□□□ -0.62
SHMT2-229ENST00000557348 PLGLB1Q02325 96 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 GK2Q14410 553 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-229ENST00000557348 TAF13Q15543 124 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 CARD17Q5XLA6 110 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 ZNF626Q68DY1 528 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 LRFN4Q6PJG9 635 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 TMPRSS7Q7RTY8 843 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 LINC00346Q8IVM7 164 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 SULF2Q8IWU5 870 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 C20orf196Q8IYI0 205 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 NKAIN3Q8N8D7 197 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 MDS2Q8NDY4 140 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 CCDC54Q8NEL0 328 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 GJC3Q8NFK1 279 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 OR6K3Q8NGY3 331 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 OR10D3Q8NH80 312 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 HAS2Q92819 552 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 TMEM45BQ96B21 275 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 PHYHIPLQ96FC7 376 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 SIGLEC12Q96PQ1 595 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 TTTY12Q9BZ98 90 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 G6PC2Q9NQR9 355 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 CENPMQ9NSP4 180 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 FAM206AQ9NX38 181 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 TAS2R8Q9NYW2 309 aa11.18□□□□□ -0.62
SHMT2-229ENST00000557348 PTPRZ1P23471 2315 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-229ENST00000557348 OTOGLQ3ZCN5 2332 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 CYTIPO60759 359 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 ACTL6AO96019 429 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 EIF1AXP47813 144 aaKnown RBP11.17□□□□□ -0.62
SHMT2-229ENST00000557348 MRPS34P82930 218 aaKnown RBP11.17□□□□□ -0.62
SHMT2-229ENST00000557348 FGL1Q08830 312 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 GLT8D1Q68CQ7 371 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 LINC00696Q6ZRV3 163 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 LRRTM1Q86UE6 522 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 FBXW5Q969U6 566 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 FOXRED1Q96CU9 486 aaPredicted RBP11.17□□□□□ -0.62
SHMT2-229ENST00000557348 UCN2Q96RP3 112 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 SRXN1Q9BYN0 137 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 ACKR4Q9NPB9 350 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 STEAP1Q9UHE8 339 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 PURGQ9UJV8 347 aaKnown RBP11.17□□□□□ -0.62
SHMT2-229ENST00000557348 CDV3Q9UKY7 258 aaKnown RBP11.17□□□□□ -0.62
SHMT2-229ENST00000557348 FLVCR1Q9Y5Y0 555 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 LHFPL6Q9Y693 200 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 MYO15AQ9UKN7 3530 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 LOC107986453A0A1B0GWG9 222 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 ZNF716A6NP11 495 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 H7C2Y5 167 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 CXCL13O43927 109 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 GLSO94925 669 aaPredicted RBP11.17□□□□□ -0.62
SHMT2-229ENST00000557348 SYNGR4O95473 234 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 PNPP00491 289 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 UBBP0CG47 229 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 RPA2P15927 270 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 CTSSP25774 331 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 RPS27AP62979 156 aaKnown RBP11.17□□□□□ -0.62
SHMT2-229ENST00000557348 UBA52P62987 128 aaKnown RBP11.17□□□□□ -0.62
SHMT2-229ENST00000557348 SSBP1Q04837 148 aaKnown RBP11.17□□□□□ -0.62
SHMT2-229ENST00000557348 MFGE8Q08431 387 aaPredicted RBP11.17□□□□□ -0.62
SHMT2-229ENST00000557348 HLXQ14774 488 aaPredicted RBP11.17□□□□□ -0.62
SHMT2-229ENST00000557348 NRN1LQ496H8 165 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 CFAP77Q6ZQR2 320 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 FCRLAQ7L513 359 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 CHMP1BQ7LBR1 199 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 WDFY1Q8IWB7 410 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 CDH26Q8IXH8 852 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 GPR137CQ8N3F9 429 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 ZIC4Q8N9L1 334 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 OR13C3Q8NGS6 347 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 LGALS14Q8TCE9 139 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 CPT1CQ8TCG5 803 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 ASB5Q8WWX0 329 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 ELMOD3Q96FG2 381 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 S100A16Q96FQ6 103 aaKnown RBP11.17□□□□□ -0.62
SHMT2-229ENST00000557348 ZNF385AQ96PM9 386 aaKnown RBP11.17□□□□□ -0.62
SHMT2-229ENST00000557348 SLC25A18Q9H1K4 315 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 SLC17A5Q9NRA2 495 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 PARPBPQ9NWS1 579 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 ASH2LQ9UBL3 628 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 MGAT4CQ9UBM8 478 aa11.17□□□□□ -0.62
SHMT2-229ENST00000557348 MCTS1Q9ULC4 181 aaKnown RBP11.17□□□□□ -0.62
SHMT2-229ENST00000557348 PCSK5Q92824 1860 aa11.16□□□□□ -0.62
SHMT2-229ENST00000557348 IGKV3D-15A0A087WSY6 115 aa11.16□□□□□ -0.62
SHMT2-229ENST00000557348 IGHV3-15A0A0B4J1V0 119 aa11.16□□□□□ -0.62
SHMT2-229ENST00000557348 A0A0D9SG52 128 aa11.16□□□□□ -0.62
SHMT2-229ENST00000557348 PINLYPA6NC86 204 aa11.16□□□□□ -0.62
SHMT2-229ENST00000557348 ARGFXA6NJG6 315 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms