RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 SLC22A13Q9Y226 551 aa14.67□□□□□ -0.06
LIG1-204ENST00000542460 FBN2P35556 2912 aa14.67□□□□□ -0.06
LIG1-204ENST00000542460 E9PI62 339 aa14.66□□□□□ -0.06
LIG1-204ENST00000542460 CD8AP01732 235 aa14.66□□□□□ -0.06
LIG1-204ENST00000542460 BMP4P12644 408 aa14.66□□□□□ -0.06
LIG1-204ENST00000542460 KITLGP21583 273 aa14.66□□□□□ -0.06
LIG1-204ENST00000542460 TGM4P49221 684 aa14.66□□□□□ -0.06
LIG1-204ENST00000542460 NANOS3P60323 173 aaKnown RBP14.66□□□□□ -0.06
LIG1-204ENST00000542460 KCTD21Q4G0X4 260 aa14.66□□□□□ -0.06
LIG1-204ENST00000542460 WDR38Q5JTN6 314 aa14.66□□□□□ -0.06
LIG1-204ENST00000542460 OR51E1Q8TCB6 317 aa14.66□□□□□ -0.06
LIG1-204ENST00000542460 TRAF4Q9BUZ4 470 aaPredicted RBP14.66□□□□□ -0.06
LIG1-204ENST00000542460 LIME1Q9H400 295 aa14.66□□□□□ -0.06
LIG1-204ENST00000542460 TRIM36Q9NQ86 728 aa14.66□□□□□ -0.06
LIG1-204ENST00000542460 MYEF2Q9P2K5 600 aaKnown RBP14.66□□□□□ -0.06
LIG1-204ENST00000542460 GPR160Q9UJ42 338 aa14.66□□□□□ -0.06
LIG1-204ENST00000542460 PURGQ9UJV8 347 aaKnown RBP14.66□□□□□ -0.06
LIG1-204ENST00000542460 PLCE1Q9P212 2302 aa14.66□□□□□ -0.06
LIG1-204ENST00000542460 A0A1W2PPW3 197 aa14.66□□□□□ -0.06
LIG1-204ENST00000542460 TNFAIP8O95379 198 aa14.66□□□□□ -0.06
LIG1-204ENST00000542460 SNRPD2P62316 118 aaKnown RBP14.66□□□□□ -0.06
LIG1-204ENST00000542460 FAM3AP98173 230 aa14.66□□□□□ -0.06
LIG1-204ENST00000542460 ALKBH1Q13686 389 aaKnown RBP14.66□□□□□ -0.06
LIG1-204ENST00000542460 OR2T2Q6IF00 324 aa14.66□□□□□ -0.06
LIG1-204ENST00000542460 RPL22L1Q6P5R6 122 aaKnown RBP14.66□□□□□ -0.06
LIG1-204ENST00000542460 NRGNQ92686 78 aa14.66□□□□□ -0.06
LIG1-204ENST00000542460 ITFG2Q969R8 447 aa14.66□□□□□ -0.06
LIG1-204ENST00000542460 TAAR3PQ9P1P4 343 aa14.66□□□□□ -0.06
LIG1-204ENST00000542460 LRBAP50851 2863 aa14.65□□□□□ -0.06
LIG1-204ENST00000542460 TRIM64A6NGJ6 449 aa14.65□□□□□ -0.06
LIG1-204ENST00000542460 GGT3PA6NGU5 568 aa14.65□□□□□ -0.06
LIG1-204ENST00000542460 TIMM8AO60220 97 aaPredicted RBP14.65□□□□□ -0.06
LIG1-204ENST00000542460 IGLV3-1P01715 115 aa14.65□□□□□ -0.06
LIG1-204ENST00000542460 UBCP0CG48 685 aaKnown RBP14.65□□□□□ -0.06
LIG1-204ENST00000542460 LIPAP38571 399 aa14.65□□□□□ -0.06
LIG1-204ENST00000542460 DDOSTP39656 456 aa14.65□□□□□ -0.06
LIG1-204ENST00000542460 KIR3DL2P43630 455 aa14.65□□□□□ -0.06
LIG1-204ENST00000542460 GTF2A1P52655 376 aaPredicted RBP14.65□□□□□ -0.06
LIG1-204ENST00000542460 SPHARQ15513 63 aa14.65□□□□□ -0.06
LIG1-204ENST00000542460 NKPD1Q17RQ9 610 aa14.65□□□□□ -0.06
LIG1-204ENST00000542460 C11orf71Q6IPW1 123 aa14.65□□□□□ -0.06
LIG1-204ENST00000542460 PAMR1Q6UXH9 720 aa14.65□□□□□ -0.06
LIG1-204ENST00000542460 COMMD2Q86X83 199 aa14.65□□□□□ -0.06
LIG1-204ENST00000542460 LYZL4Q96KX0 146 aa14.65□□□□□ -0.06
LIG1-204ENST00000542460 CCL19Q99731 98 aa14.65□□□□□ -0.06
LIG1-204ENST00000542460 GPR84Q9NQS5 396 aa14.65□□□□□ -0.06
LIG1-204ENST00000542460 CGGBP1Q9UFW8 167 aaPredicted RBP14.65□□□□□ -0.06
LIG1-204ENST00000542460 LSM2Q9Y333 95 aaKnown RBP14.65□□□□□ -0.06
LIG1-204ENST00000542460 PMF1-BGLAPU3KQ54 211 aa14.65□□□□□ -0.06
LIG1-204ENST00000542460 TRBV2A0A0J9YWF9 115 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 hCG_38984A0A1B0GV85 526 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 PLSCR5A0PG75 271 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 CD300LBA8K4G0 201 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 IQCF6A8MYZ5 107 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 M0R233 179 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 P2RY10O00398 339 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 LALBAP00709 142 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 GSK3AP49840 483 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 PRSS12P56730 875 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 TAS2R43P59537 309 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 BDH1Q02338 343 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 ACSM1Q08AH1 577 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 MED22Q15528 200 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 TBCEQ15813 527 aaPredicted RBP14.64□□□□□ -0.07
LIG1-204ENST00000542460 ODF4Q2M2E3 257 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 ALKBH6Q3KRA9 238 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 TMEM255AQ5JRV8 349 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 XAF1Q6GPH4 301 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 LURAP1LQ8IV03 231 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 SVOPQ8N4V2 548 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 IGFBPL1Q8WX77 278 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 PIGTQ969N2 578 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 LURAP1Q96LR2 239 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 OR5M11Q96RB7 305 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 MS4A5Q9H3V2 200 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 CYSLTR2Q9NS75 346 aa14.64□□□□□ -0.07
LIG1-204ENST00000542460 A0A1B0GTI1 187 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 LOC390937A0A1W2PQ73 354 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 TMEM212A6NML5 194 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 OR4C45A6NMZ5 311 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 OGG1O15527 345 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 MTRF1O75570 445 aaKnown RBP14.63□□□□□ -0.07
LIG1-204ENST00000542460 RAF1P04049 648 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 ISG15P05161 165 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 RPSAP08865 295 aaKnown RBP14.63□□□□□ -0.07
LIG1-204ENST00000542460 ATP6V1B1P15313 513 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 ALDH3B1P43353 468 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 MAP2K4P45985 399 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 MMP15P51511 669 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 CDH15P55291 814 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 EMX1Q04741 257 aaPredicted RBP14.63□□□□□ -0.07
LIG1-204ENST00000542460 CDK5R1Q15078 307 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 OR8B8Q15620 311 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 TMEM244Q5VVB8 128 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 ZNF773Q6PK81 442 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 DOK3Q7L591 496 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 SPARTQ8N0X7 666 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 OR5AS1Q8N127 324 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 PLPP7Q8NBV4 271 aa14.63□□□□□ -0.07
LIG1-204ENST00000542460 OR8G5Q8NG78 346 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 133.2 ms