RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 OR2V1Q8NHB1 315 aa10.45□□□□□ -0.74
CLIP1-208ENST00000537004 ROBO4Q8WZ75 1007 aa10.45□□□□□ -0.74
CLIP1-208ENST00000537004 SLAMF6Q96DU3 332 aa10.45□□□□□ -0.74
CLIP1-208ENST00000537004 C14orf79Q96F83 325 aa10.45□□□□□ -0.74
CLIP1-208ENST00000537004 CMTM3Q96MX0 182 aa10.45□□□□□ -0.74
CLIP1-208ENST00000537004 ZFP3Q96NJ6 502 aa10.45□□□□□ -0.74
CLIP1-208ENST00000537004 ABHD1Q96SE0 405 aa10.45□□□□□ -0.74
CLIP1-208ENST00000537004 RBM24Q9BX46 236 aaKnown RBP10.45□□□□□ -0.74
CLIP1-208ENST00000537004 SRXN1Q9BYN0 137 aa10.45□□□□□ -0.74
CLIP1-208ENST00000537004 OPN3Q9H1Y3 402 aaPredicted RBP10.45□□□□□ -0.74
CLIP1-208ENST00000537004 LIN7BQ9HAP6 207 aa10.45□□□□□ -0.74
CLIP1-208ENST00000537004 G6PC2Q9NQR9 355 aa10.45□□□□□ -0.74
CLIP1-208ENST00000537004 POLR1DQ9Y2S0 133 aa10.45□□□□□ -0.74
CLIP1-208ENST00000537004 LHFPL6Q9Y693 200 aa10.45□□□□□ -0.74
CLIP1-208ENST00000537004 TMEM269A0A1B0GVZ9 245 aa10.44□□□□□ -0.74
CLIP1-208ENST00000537004 A8MXE2 369 aa10.44□□□□□ -0.74
CLIP1-208ENST00000537004 NR2C1P13056 603 aa10.44□□□□□ -0.74
CLIP1-208ENST00000537004 ARPC4P59998 168 aa10.44□□□□□ -0.74
CLIP1-208ENST00000537004 FAM27E3Q08E93 113 aa10.44□□□□□ -0.74
CLIP1-208ENST00000537004 CARTPTQ16568 116 aa10.44□□□□□ -0.74
CLIP1-208ENST00000537004 ESPNLQ6ZVH7 1005 aa10.44□□□□□ -0.74
CLIP1-208ENST00000537004 UBE2J2Q8N2K1 259 aa10.44□□□□□ -0.74
CLIP1-208ENST00000537004 OR9K2Q8NGE7 335 aa10.44□□□□□ -0.74
CLIP1-208ENST00000537004 OR10S1Q8NGN2 331 aa10.44□□□□□ -0.74
CLIP1-208ENST00000537004 PRRG4Q9BZD6 226 aa10.44□□□□□ -0.74
CLIP1-208ENST00000537004 HDHD2Q9H0R4 259 aa10.44□□□□□ -0.74
CLIP1-208ENST00000537004 C1orf198Q9H425 327 aa10.44□□□□□ -0.74
CLIP1-208ENST00000537004 GLTPQ9NZD2 209 aa10.44□□□□□ -0.74
CLIP1-208ENST00000537004 GDF2Q9UK05 429 aaPredicted RBP10.44□□□□□ -0.74
CLIP1-208ENST00000537004 POU2F3Q9UKI9 436 aa10.44□□□□□ -0.74
CLIP1-208ENST00000537004 OR52A1Q9UKL2 312 aa10.44□□□□□ -0.74
CLIP1-208ENST00000537004 DHDHQ9UQ10 334 aa10.44□□□□□ -0.74
CLIP1-208ENST00000537004 ZNF175Q9Y473 711 aa10.44□□□□□ -0.74
CLIP1-208ENST00000537004 DNPH1O43598 174 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 UBL3O95164 117 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 ENPP1P22413 925 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 NR4A2P43354 598 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 MAP2K3P46734 347 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 CSNK1A1P48729 337 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 TPTEP56180 551 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 CARD18P57730 90 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 RAC3P60763 192 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 ZNF474Q6S9Z5 364 aaPredicted RBP10.43□□□□□ -0.74
CLIP1-208ENST00000537004 CFAP77Q6ZQR2 320 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 TMEM200AQ86VY9 491 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 OR2AJ1Q8NGZ0 328 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 ENKURQ8TC29 256 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 ABHD3Q8WU67 409 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 RFT1Q96AA3 541 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 ZNF385AQ96PM9 386 aaKnown RBP10.43□□□□□ -0.74
CLIP1-208ENST00000537004 OR2M2Q96R28 347 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 THAP7Q9BT49 309 aaPredicted RBP10.43□□□□□ -0.74
CLIP1-208ENST00000537004 MRI1Q9BV20 369 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 KCNN3Q9UGI6 736 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 RBMX2Q9Y388 322 aaKnown RBP10.43□□□□□ -0.74
CLIP1-208ENST00000537004 FREM1Q5H8C1 2179 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 TUBAL3A6NHL2 446 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 SMAD9O15198 467 aaKnown RBP10.43□□□□□ -0.74
CLIP1-208ENST00000537004 LYRM1O43325 122 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 LANCL1O43813 399 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 CGAP01215 116 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 ISG15P05161 165 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 CALCBP10092 127 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 MMP16P51512 607 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 PITPNAQ00169 270 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 GUSBP1Q15486 140 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 KCNMB1Q16558 191 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 BCL2L15Q5TBC7 163 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 ZNF57Q68EA5 555 aaPredicted RBP10.43□□□□□ -0.74
CLIP1-208ENST00000537004 OR2A2Q6IF42 318 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 MZT2BQ6NZ67 158 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 BAIAP2L2Q6UXY1 529 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 ZNF704Q6ZNC4 412 aaPredicted RBP10.43□□□□□ -0.74
CLIP1-208ENST00000537004 FCRLAQ7L513 359 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 CMTM4Q8IZR5 234 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 ZNF610Q8N9Z0 462 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 OR6N1Q8NGY5 312 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 TRIM63Q969Q1 353 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 SLC25A38Q96DW6 304 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 MMP28Q9H239 520 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 RBFOX1Q9NWB1 397 aaKnown RBP10.43□□□□□ -0.74
CLIP1-208ENST00000537004 OR5V1Q9UGF6 321 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 MCTS1Q9ULC4 181 aaKnown RBP10.43□□□□□ -0.74
CLIP1-208ENST00000537004 HHLA2Q9UM44 414 aa10.43□□□□□ -0.74
CLIP1-208ENST00000537004 ZNF469Q96JG9 3925 aaPredicted RBP10.42□□□□□ -0.74
CLIP1-208ENST00000537004 LOC107986453A0A1B0GWG9 222 aa10.42□□□□□ -0.74
CLIP1-208ENST00000537004 DOK2O60496 412 aa10.42□□□□□ -0.74
CLIP1-208ENST00000537004 CD2P06729 351 aa10.42□□□□□ -0.74
CLIP1-208ENST00000537004 ACHEP22303 614 aa10.42□□□□□ -0.74
CLIP1-208ENST00000537004 DCTDP32321 178 aa10.42□□□□□ -0.74
CLIP1-208ENST00000537004 ASPHD2Q6ICH7 369 aa10.42□□□□□ -0.74
CLIP1-208ENST00000537004 KLHL24Q6TFL4 600 aa10.42□□□□□ -0.74
CLIP1-208ENST00000537004 AKAP14Q86UN6 197 aa10.42□□□□□ -0.74
CLIP1-208ENST00000537004 TMEM123Q8N131 208 aa10.42□□□□□ -0.74
CLIP1-208ENST00000537004 ZIC4Q8N9L1 334 aa10.42□□□□□ -0.74
CLIP1-208ENST00000537004 CHAC2Q8WUX2 184 aa10.42□□□□□ -0.74
CLIP1-208ENST00000537004 TMEM54Q969K7 222 aa10.42□□□□□ -0.74
CLIP1-208ENST00000537004 ZC3HAV1LQ96H79 300 aaKnown RBP10.42□□□□□ -0.74
CLIP1-208ENST00000537004 SF3B5Q9BWJ5 86 aaKnown RBP10.42□□□□□ -0.74
CLIP1-208ENST00000537004 FAM206AQ9NX38 181 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms