RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 IFNA2P01563 188 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 PRR23D2P0DMB1 279 aaPredicted RBP8.91□□□□□ -0.98
CD44-227ENST00000528086 HOXB6P17509 224 aaKnown RBP8.91□□□□□ -0.98
CD44-227ENST00000528086 TNFRSF1AP19438 455 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 CX3CR1P49238 355 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 ZNF181Q2M3W8 571 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 KLF17Q5JT82 389 aaPredicted RBP8.91□□□□□ -0.98
CD44-227ENST00000528086 AADACL4Q5VUY2 407 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 C12orf73Q69YU5 71 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 FAHD2BQ6P2I3 314 aaPredicted RBP8.91□□□□□ -0.98
CD44-227ENST00000528086 ZNF841Q6ZN19 808 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 ZNF826PQ6ZT77 177 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 SLC16A9Q7RTY1 509 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 SEMA6DQ8NFY4 1073 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 SPATA3Q8NHX4 192 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 SPTSSAQ969W0 71 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 PPP1R14AQ96A00 147 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 OTULINQ96BN8 352 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 RAB39BQ96DA2 213 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 FAHD2AQ96GK7 314 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 TIMD4Q96H15 378 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 TEAD3Q99594 435 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 METTL17Q9H7H0 456 aaPredicted RBP8.91□□□□□ -0.98
CD44-227ENST00000528086 PAPOLBQ9NRJ5 636 aaKnown RBP8.91□□□□□ -0.98
CD44-227ENST00000528086 TVP23BQ9NYZ1 205 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 DNAJC27Q9NZQ0 273 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 AP4S1Q9Y587 144 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 N6AMT1Q9Y5N5 214 aa8.91□□□□□ -0.98
CD44-227ENST00000528086 SOX21Q9Y651 276 aaPredicted RBP8.91□□□□□ -0.98
CD44-227ENST00000528086 PSMD9O00233 223 aa8.9□□□□□ -0.98
CD44-227ENST00000528086 MAGEB4O15481 346 aaPredicted RBP8.9□□□□□ -0.98
CD44-227ENST00000528086 PRODHO43272 600 aa8.9□□□□□ -0.98
CD44-227ENST00000528086 SRSF10O75494 262 aaKnown RBP8.9□□□□□ -0.98
CD44-227ENST00000528086 FSTL3O95633 263 aa8.9□□□□□ -0.98
CD44-227ENST00000528086 HMGN1P05114 100 aa8.9□□□□□ -0.98
CD44-227ENST00000528086 EGR1P18146 543 aa8.9□□□□□ -0.98
CD44-227ENST00000528086 TNFSF4P23510 183 aa8.9□□□□□ -0.98
CD44-227ENST00000528086 CD80P33681 288 aa8.9□□□□□ -0.98
CD44-227ENST00000528086 MDH2P40926 338 aaKnown RBP8.9□□□□□ -0.98
CD44-227ENST00000528086 BLVRAP53004 296 aa8.9□□□□□ -0.98
CD44-227ENST00000528086 SLC3A1Q07837 685 aa8.9□□□□□ -0.98
CD44-227ENST00000528086 APOFQ13790 326 aa8.9□□□□□ -0.98
CD44-227ENST00000528086 ZNF404Q494X3 552 aa8.9□□□□□ -0.98
CD44-227ENST00000528086 SLX4IPQ5VYV7 408 aa8.9□□□□□ -0.98
CD44-227ENST00000528086 LRRN1Q6UXK5 716 aa8.9□□□□□ -0.98
CD44-227ENST00000528086 FAM57BQ71RH2 274 aa8.9□□□□□ -0.98
CD44-227ENST00000528086 MRPL21Q7Z2W9 205 aaKnown RBP8.9□□□□□ -0.98
CD44-227ENST00000528086 CELF2-AS1Q8N7Q2 184 aa8.9□□□□□ -0.98
CD44-227ENST00000528086 CIB1Q99828 191 aa8.9□□□□□ -0.98
CD44-227ENST00000528086 UFSP2Q9NUQ7 469 aa8.9□□□□□ -0.98
CD44-227ENST00000528086 MRPL15Q9P015 296 aaKnown RBP8.9□□□□□ -0.98
CD44-227ENST00000528086 CTSZQ9UBR2 303 aa8.9□□□□□ -0.98
CD44-227ENST00000528086 RHBDD3Q9Y3P4 386 aa8.9□□□□□ -0.98
CD44-227ENST00000528086 PPIAL4EA0A075B759 164 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 PPIAL4CA0A0B4J2A2 164 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 PPIAL4DF5H284 164 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 ATP5HO75947 161 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 LHBP01229 141 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 IGLV3-1P01715 115 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 LYNP07948 512 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 MRPL3P09001 348 aaKnown RBP8.89□□□□□ -0.99
CD44-227ENST00000528086 PPIAL4FP0DN26 164 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 ZNF12P17014 697 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 AMY2BP19961 511 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 PSMB10P40306 273 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 SRP9P49458 86 aaKnown RBP8.89□□□□□ -0.99
CD44-227ENST00000528086 GSK3AP49840 483 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 GRB2P62993 217 aaKnown RBP8.89□□□□□ -0.99
CD44-227ENST00000528086 PAX8Q06710 450 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 MALLQ13021 153 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 OR8B8Q15620 311 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 SNAPC1Q16533 368 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 SLC35D3Q5M8T2 416 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 C1orf146Q5VVC0 180 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 RHOUQ7L0Q8 258 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 SHFQ7M4L6 423 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 KRT74Q7RTS7 529 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 C1QL2Q7Z5L3 287 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 FGFRL1Q8N441 504 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 GCSAMQ8N6F7 178 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 OR8B12Q8NGG6 310 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 THEM6Q8WUY1 208 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 SPRYD4Q8WW59 207 aaPredicted RBP8.89□□□□□ -0.99
CD44-227ENST00000528086 UBE2FQ969M7 185 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 RNF166Q96A37 237 aaPredicted RBP8.89□□□□□ -0.99
CD44-227ENST00000528086 SEH1LQ96EE3 360 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 REEP6Q96HR9 211 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 PKP2Q99959 881 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 ADAT1Q9BUB4 502 aaKnown RBP8.89□□□□□ -0.99
CD44-227ENST00000528086 C19orf24Q9BVV8 132 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 SEMA6AQ9H2E6 1030 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 MMADHCQ9H3L0 296 aaPredicted RBP8.89□□□□□ -0.99
CD44-227ENST00000528086 TOR3AQ9H497 397 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 YY1AP1Q9H869 796 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 ZNF556Q9HAH1 456 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 BRD7Q9NPI1 651 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 ESM1Q9NQ30 184 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 LRP12Q9Y561 859 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 INSIG2Q9Y5U4 225 aa8.89□□□□□ -0.99
CD44-227ENST00000528086 A0A0G2JMP0 313 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms