RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 SNAPC1Q16533 368 aa17.34■□□□□ 0.37
VPS28-206ENST00000526734 LCN1P1Q5VSP4 162 aa17.34■□□□□ 0.37
VPS28-206ENST00000526734 MOGAT3Q86VF5 341 aa17.34■□□□□ 0.37
VPS28-206ENST00000526734 HIST2H2ABQ8IUE6 130 aaPredicted RBP17.34■□□□□ 0.37
VPS28-206ENST00000526734 ZDHHC13Q8IUH4 622 aa17.34■□□□□ 0.37
VPS28-206ENST00000526734 GABARAPL1Q9H0R8 117 aa17.34■□□□□ 0.37
VPS28-206ENST00000526734 LRCH1Q9Y2L9 728 aa17.34■□□□□ 0.37
VPS28-206ENST00000526734 A0A0A6YYJ9 748 aa17.33■□□□□ 0.36
VPS28-206ENST00000526734 G3V2T6 193 aa17.33■□□□□ 0.36
VPS28-206ENST00000526734 TCF21O43680 179 aa17.33■□□□□ 0.36
VPS28-206ENST00000526734 SLC2A1P11166 492 aa17.33■□□□□ 0.36
VPS28-206ENST00000526734 SLC2A5P22732 501 aa17.33■□□□□ 0.36
VPS28-206ENST00000526734 CA6P23280 308 aa17.33■□□□□ 0.36
VPS28-206ENST00000526734 DAPP51397 102 aa17.33■□□□□ 0.36
VPS28-206ENST00000526734 RPS7P62081 194 aaKnown RBP17.33■□□□□ 0.36
VPS28-206ENST00000526734 MAB21L1Q13394 359 aa17.33■□□□□ 0.36
VPS28-206ENST00000526734 TIGD6Q17RP2 521 aa17.33■□□□□ 0.36
VPS28-206ENST00000526734 ESCO2Q56NI9 601 aa17.33■□□□□ 0.36
VPS28-206ENST00000526734 SPATC1Q76KD6 591 aa17.33■□□□□ 0.36
VPS28-206ENST00000526734 ZNF420Q8TAQ5 688 aaPredicted RBP17.33■□□□□ 0.36
VPS28-206ENST00000526734 YIPF3Q9GZM5 350 aa17.33■□□□□ 0.36
VPS28-206ENST00000526734 OR10A2Q9H208 303 aa17.33■□□□□ 0.36
VPS28-206ENST00000526734 METTL17Q9H7H0 456 aaPredicted RBP17.33■□□□□ 0.36
VPS28-206ENST00000526734 FN3KRPQ9HA64 309 aa17.33■□□□□ 0.36
VPS28-206ENST00000526734 KRT84Q9NSB2 600 aa17.33■□□□□ 0.36
VPS28-206ENST00000526734 TVP23BQ9NYZ1 205 aa17.33■□□□□ 0.36
VPS28-206ENST00000526734 ZNF391Q9UJN7 358 aa17.33■□□□□ 0.36
VPS28-206ENST00000526734 DYSFO75923 2080 aa17.33■□□□□ 0.36
VPS28-206ENST00000526734 COL6A5A8TX70 2615 aa17.33■□□□□ 0.36
VPS28-206ENST00000526734 ANKRD30BLA7E2S9 258 aa17.32■□□□□ 0.36
VPS28-206ENST00000526734 TBX1O43435 398 aa17.32■□□□□ 0.36
VPS28-206ENST00000526734 PRSS12P56730 875 aa17.32■□□□□ 0.36
VPS28-206ENST00000526734 LCN2P80188 198 aa17.32■□□□□ 0.36
VPS28-206ENST00000526734 PTGES3Q15185 160 aaKnown RBP17.32■□□□□ 0.36
VPS28-206ENST00000526734 TMEM236Q5W0B7 351 aa17.32■□□□□ 0.36
VPS28-206ENST00000526734 SLC16A9Q7RTY1 509 aa17.32■□□□□ 0.36
VPS28-206ENST00000526734 C1QL2Q7Z5L3 287 aa17.32■□□□□ 0.36
VPS28-206ENST00000526734 FTMTQ8N4E7 242 aa17.32■□□□□ 0.36
VPS28-206ENST00000526734 OR56B2PQ8NGI1 322 aa17.32■□□□□ 0.36
VPS28-206ENST00000526734 ITFG2Q969R8 447 aa17.32■□□□□ 0.36
VPS28-206ENST00000526734 TMPRSS13Q9BYE2 586 aa17.32■□□□□ 0.36
VPS28-206ENST00000526734 C14orf119Q9NWQ9 140 aa17.32■□□□□ 0.36
VPS28-206ENST00000526734 MIOXQ9UGB7 285 aa17.32■□□□□ 0.36
VPS28-206ENST00000526734 MXRA5Q9NR99 2828 aa17.31■□□□□ 0.36
VPS28-206ENST00000526734 CEACAM18A8MTB9 384 aa17.31■□□□□ 0.36
VPS28-206ENST00000526734 SELENOFO60613 162 aa17.31■□□□□ 0.36
VPS28-206ENST00000526734 CYB5R3P00387 301 aaPredicted RBP17.31■□□□□ 0.36
VPS28-206ENST00000526734 ZNF121P58317 390 aaPredicted RBP17.31■□□□□ 0.36
VPS28-206ENST00000526734 DEGS2Q6QHC5 323 aa17.31■□□□□ 0.36
VPS28-206ENST00000526734 NLRC3Q7RTR2 1065 aa17.31■□□□□ 0.36
VPS28-206ENST00000526734 PRSS45Q7RTY3 260 aa17.31■□□□□ 0.36
VPS28-206ENST00000526734 CSNK2A3Q8NEV1 391 aa17.31■□□□□ 0.36
VPS28-206ENST00000526734 THEM6Q8WUY1 208 aa17.31■□□□□ 0.36
VPS28-206ENST00000526734 REEP6Q96HR9 211 aa17.31■□□□□ 0.36
VPS28-206ENST00000526734 OSBPL10Q9BXB5 764 aa17.31■□□□□ 0.36
VPS28-206ENST00000526734 TMEM165Q9HC07 324 aa17.31■□□□□ 0.36
VPS28-206ENST00000526734 TRIM36Q9NQ86 728 aa17.31■□□□□ 0.36
VPS28-206ENST00000526734 OR5V1Q9UGF6 321 aa17.31■□□□□ 0.36
VPS28-206ENST00000526734 LAMP5Q9UJQ1 280 aa17.31■□□□□ 0.36
VPS28-206ENST00000526734 PPIAL4AQ9Y536 164 aa17.31■□□□□ 0.36
VPS28-206ENST00000526734 N6AMT1Q9Y5N5 214 aa17.31■□□□□ 0.36
VPS28-206ENST00000526734 TMEM14AQ9Y6G1 99 aa17.31■□□□□ 0.36
VPS28-206ENST00000526734 hCG_38984A0A1B0GV85 526 aa17.3■□□□□ 0.36
VPS28-206ENST00000526734 RPS2P15880 293 aaKnown RBP17.3■□□□□ 0.36
VPS28-206ENST00000526734 ALOX5APP20292 161 aa17.3■□□□□ 0.36
VPS28-206ENST00000526734 NAA10P41227 235 aaPredicted RBP17.3■□□□□ 0.36
VPS28-206ENST00000526734 PSMA6P60900 246 aaKnown RBP17.3■□□□□ 0.36
VPS28-206ENST00000526734 APOFQ13790 326 aa17.3■□□□□ 0.36
VPS28-206ENST00000526734 KCNJ8Q15842 424 aa17.3■□□□□ 0.36
VPS28-206ENST00000526734 ZNF404Q494X3 552 aa17.3■□□□□ 0.36
VPS28-206ENST00000526734 KDM4DQ6B0I6 523 aa17.3■□□□□ 0.36
VPS28-206ENST00000526734 KCTD18Q6PI47 426 aaPredicted RBP17.3■□□□□ 0.36
VPS28-206ENST00000526734 FAM57BQ71RH2 274 aa17.3■□□□□ 0.36
VPS28-206ENST00000526734 ZNF771Q7L3S4 317 aaPredicted RBP17.3■□□□□ 0.36
VPS28-206ENST00000526734 BBS1Q8NFJ9 593 aa17.3■□□□□ 0.36
VPS28-206ENST00000526734 NANPQ8TBE9 248 aa17.3■□□□□ 0.36
VPS28-206ENST00000526734 PGAM5Q96HS1 289 aa17.3■□□□□ 0.36
VPS28-206ENST00000526734 AMELYQ99218 206 aa17.3■□□□□ 0.36
VPS28-206ENST00000526734 C7orf69Q9H7B7 122 aa17.3■□□□□ 0.36
VPS28-206ENST00000526734 ABCB9Q9NP78 766 aa17.3■□□□□ 0.36
VPS28-206ENST00000526734 RNF7Q9UBF6 113 aa17.3■□□□□ 0.36
VPS28-206ENST00000526734 FBN1P35555 2871 aaKnown RBP17.29■□□□□ 0.36
VPS28-206ENST00000526734 C5orf63A6NC05 138 aa17.29■□□□□ 0.36
VPS28-206ENST00000526734 FAM20BO75063 409 aa17.29■□□□□ 0.36
VPS28-206ENST00000526734 WNT2P09544 360 aa17.29■□□□□ 0.36
VPS28-206ENST00000526734 ANOS1P23352 680 aa17.29■□□□□ 0.36
VPS28-206ENST00000526734 PMELP40967 661 aa17.29■□□□□ 0.36
VPS28-206ENST00000526734 FAM3AP98173 230 aa17.29■□□□□ 0.36
VPS28-206ENST00000526734 SLX4IPQ5VYV7 408 aa17.29■□□□□ 0.36
VPS28-206ENST00000526734 DCDC5Q6ZRR9 648 aa17.29■□□□□ 0.36
VPS28-206ENST00000526734 ASRGL1Q7L266 308 aa17.29■□□□□ 0.36
VPS28-206ENST00000526734 KRT77Q7Z794 578 aa17.29■□□□□ 0.36
VPS28-206ENST00000526734 ASB17Q8WXJ9 295 aa17.29■□□□□ 0.36
VPS28-206ENST00000526734 SGK3Q96BR1 496 aa17.29■□□□□ 0.36
VPS28-206ENST00000526734 NEIL1Q96FI4 390 aaPredicted RBP17.29■□□□□ 0.36
VPS28-206ENST00000526734 MNTQ99583 582 aa17.29■□□□□ 0.36
VPS28-206ENST00000526734 TEAD3Q99594 435 aa17.29■□□□□ 0.36
VPS28-206ENST00000526734 DNAJC27Q9NZQ0 273 aa17.29■□□□□ 0.36
VPS28-206ENST00000526734 ACOD1A6NK06 481 aa17.28■□□□□ 0.36
VPS28-206ENST00000526734 ZAR1LA6NP61 321 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms