RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, human

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-215	ENST00000511843	CEACAM18	A8MTB9	384 aa		11.15	□□□□□ -0.62
RNF4-215	ENST00000511843	PSMD9	O00233	223 aa		11.15	□□□□□ -0.62
RNF4-215	ENST00000511843	PRODH	O43272	600 aa		11.15	□□□□□ -0.62
RNF4-215	ENST00000511843	PRKY	O43930	277 aa		11.15	□□□□□ -0.62
RNF4-215	ENST00000511843	FAM20B	O75063	409 aa		11.15	□□□□□ -0.62
RNF4-215	ENST00000511843	LYN	P07948	512 aa		11.15	□□□□□ -0.62
RNF4-215	ENST00000511843	H2BFM	P0C1H6	154 aa		11.15	□□□□□ -0.62
RNF4-215	ENST00000511843	SLC15A1	P46059	708 aa		11.15	□□□□□ -0.62
RNF4-215	ENST00000511843	PTGES3	Q15185	160 aa	Known RBP	11.15	□□□□□ -0.62
RNF4-215	ENST00000511843	LRRN1	Q6UXK5	716 aa		11.15	□□□□□ -0.62
RNF4-215	ENST00000511843	SHF	Q7M4L6	423 aa		11.15	□□□□□ -0.62
RNF4-215	ENST00000511843	SLC16A9	Q7RTY1	509 aa		11.15	□□□□□ -0.62
RNF4-215	ENST00000511843	PRSS45	Q7RTY3	260 aa		11.15	□□□□□ -0.62
RNF4-215	ENST00000511843	KLHL36	Q8N4N3	616 aa		11.15	□□□□□ -0.62
RNF4-215	ENST00000511843	SPIC	Q8N5J4	248 aa		11.15	□□□□□ -0.62
RNF4-215	ENST00000511843	BOLL	Q8N9W6	283 aa	Known RBP	11.15	□□□□□ -0.62
RNF4-215	ENST00000511843	OR4M2	Q8NGB6	313 aa		11.15	□□□□□ -0.62
RNF4-215	ENST00000511843	OTOS	Q8NHW6	89 aa		11.15	□□□□□ -0.62
RNF4-215	ENST00000511843	SGK3	Q96BR1	496 aa		11.15	□□□□□ -0.62
RNF4-215	ENST00000511843	MMP26	Q9NRE1	261 aa		11.15	□□□□□ -0.62
RNF4-215	ENST00000511843	KRT84	Q9NSB2	600 aa		11.15	□□□□□ -0.62
RNF4-215	ENST00000511843		F5H0A9	414 aa	Predicted RBP	11.14	□□□□□ -0.63
RNF4-215	ENST00000511843		G3V2T6	193 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	TRAPPC2L	H3BP13	241 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	XRCC2	O43543	280 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	CIB2	O75838	187 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	FAS	P25445	335 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	MDH2	P40926	338 aa	Known RBP	11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	CD200	P41217	278 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	RAD23A	P54725	363 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	FAM3A	P98173	230 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	TIGD6	Q17RP2	521 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	TMEM155	Q4W5P6	130 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	PARP8	Q8N3A8	854 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	RFLNB	Q8N5W9	214 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	DEFB108B	Q8NET1	73 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	DNAJC9	Q8WXX5	260 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	TMEM158	Q8WZ71	300 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	SPSB4	Q96A44	273 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	REEP6	Q96HR9	211 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	PGAM5	Q96HS1	289 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	TMEM246	Q9BRR3	403 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	TOR3A	Q9H497	397 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	OCEL1	Q9H607	264 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	TMEM165	Q9HC07	324 aa		11.14	□□□□□ -0.63
RNF4-215	ENST00000511843	hCG_38984	A0A1B0GV85	526 aa		11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	SAC3D1	A6NKF1	404 aa		11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	PRR32	B1ATL7	298 aa		11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	GRP	P07492	148 aa		11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	RPS2	P15880	293 aa	Known RBP	11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	CD80	P33681	288 aa		11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	POLR2I	P36954	125 aa	Known RBP	11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	GATA4	P43694	442 aa		11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	SLC35D3	Q5M8T2	416 aa		11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	KDM4D	Q6B0I6	523 aa		11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	LYPD2	Q6UXB3	125 aa		11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	ZNF826P	Q6ZT77	177 aa		11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	ASRGL1	Q7L266	308 aa		11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	TCEANC	Q8N8B7	351 aa		11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	PYDC1	Q8WXC3	89 aa		11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	DUS3L	Q96G46	650 aa	Known RBP	11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	IL4I1	Q96RQ9	567 aa		11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	TEAD3	Q99594	435 aa		11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	TEX12	Q9BXU0	123 aa		11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	MMADHC	Q9H3L0	296 aa	Predicted RBP	11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	OPN4	Q9UHM6	478 aa		11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	METRN	Q9UJH8	293 aa		11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	COPS3	Q9UNS2	423 aa		11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	LRP12	Q9Y561	859 aa		11.13	□□□□□ -0.63
RNF4-215	ENST00000511843	PPIAL4E	A0A075B759	164 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843		A6NLC8	198 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	LRRC30	A6NM36	301 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	ZAR1L	A6NP61	321 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	PPIAL4D	F5H284	164 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	C3orf80	F5H4A9	247 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	IFNL4	K9M1U5	179 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	GMDS	O60547	372 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	FOXH1	O75593	365 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	WNT2	P09544	360 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	PPIAL4F	P0DN26	164 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	IRF2	P14316	349 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	ALOX5AP	P20292	161 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	THBS2	P35442	1172 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	GSK3A	P49840	483 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	ESRRG	P62508	458 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	ZNF181	Q2M3W8	571 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	ZNF404	Q494X3	552 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	ESCO2	Q56NI9	601 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	SLX4IP	Q5VYV7	408 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	SFRP4	Q6FHJ7	346 aa	Predicted RBP	11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	WDR86	Q86TI4	376 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	KLB	Q86Z14	1044 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	HIST2H2AB	Q8IUE6	130 aa	Predicted RBP	11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	ZDHHC13	Q8IUH4	622 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	C1orf87	Q8N0U7	546 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	MUC20	Q8N307	709 aa	Predicted RBP	11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	CELF2-AS1	Q8N7Q2	184 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	ZNF454	Q8N9F8	522 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	OR11L1	Q8NGX0	322 aa		11.12	□□□□□ -0.63
RNF4-215	ENST00000511843	LYZL4	Q96KX0	146 aa		11.12	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms