RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 COMMD3-BMI1R4GMX3 469 aa0.98□□□□□ -2.25
VPS50-216ENST00000484954 LTBP2Q14767 1821 aa0.98□□□□□ -2.25
VPS50-216ENST00000484954 USP47Q96K76 1375 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 KIAA1671Q9BY89 1806 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 SMIM26A0A096LP01 95 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 A0A0J9YXV3 536 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 SMCO2A6NFE2 343 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 SDHAF1A6NFY7 115 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 LYRM9A8MSI8 78 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 E7EQL1 145 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 PRAMEF26H0Y7S4 382 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 H7C1H1 209 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 GABRPO00591 440 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 PLPP1O14494 284 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 NDUFAB1O14561 156 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 FLOT1O75955 427 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 TROVE2P10155 538 aaKnown RBP eCLIP0.97□□□□□ -2.25
VPS50-216ENST00000484954 U2AF2P26368 475 aaKnown RBP eCLIP0.97□□□□□ -2.254e-7■■■□□ 17.3
VPS50-216ENST00000484954 STOMP27105 288 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 RRM2P31350 389 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 RBM34P42696 430 aaKnown RBP0.97□□□□□ -2.25
VPS50-216ENST00000484954 RPS23P62266 143 aaKnown RBP0.97□□□□□ -2.25
VPS50-216ENST00000484954 LIPEQ05469 1076 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 PPIDQ08752 370 aaKnown RBP0.97□□□□□ -2.25
VPS50-216ENST00000484954 CUL2Q13617 745 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 ITIH4Q14624 930 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 TMEM69Q5SWH9 247 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 DEGS2Q6QHC5 323 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 NT5DC3Q86UY8 548 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 CMTM1Q8IZ96 169 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 OFCC1Q8IZS5 231 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 OR52E2Q8NGJ4 325 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 OR5K2Q8NHB8 316 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 TMEM230Q96A57 120 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 RNF145Q96MT1 663 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 C18orf15Q96N68 181 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 MYCBPQ99417 103 aaPredicted RBP0.97□□□□□ -2.25
VPS50-216ENST00000484954 CENPKQ9BS16 269 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 SLC7A5P2Q9GIP4 190 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 TMEM38AQ9H6F2 299 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 TMEM185BQ9H7F4 350 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 ZNF442Q9H7R0 627 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 GEMIN7Q9H840 131 aaKnown RBP0.97□□□□□ -2.25
VPS50-216ENST00000484954 DCAF16Q9NXF7 216 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 TAS2R1Q9NYW7 299 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 CCDC59Q9P031 241 aaKnown RBP0.97□□□□□ -2.25
VPS50-216ENST00000484954 RPRD2Q5VT52 1461 aaKnown RBP0.97□□□□□ -2.25
VPS50-216ENST00000484954 AHNAK2Q8IVF2 5795 aa0.97□□□□□ -2.25
VPS50-216ENST00000484954 HELZ2Q9BYK8 2649 aaKnown RBP0.97□□□□□ -2.25
VPS50-216ENST00000484954 NSD2O96028 1365 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 INSRP06213 1382 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 NINLQ9Y2I6 1382 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 A6NDN8 102 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 CCDC169A6NNP5 214 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 AIM2O14862 343 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 NMT2O60551 498 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 SERPINB7O75635 380 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 RPN2P04844 631 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 ZNF24P17028 368 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 CTRB1P17538 263 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 CSNK2A2P19784 350 aaPredicted RBP0.96□□□□□ -2.26
VPS50-216ENST00000484954 RAB4AP20338 218 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 BCKDHBP21953 392 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 CD70P32970 193 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 POLR2IP36954 125 aaKnown RBP0.96□□□□□ -2.26
VPS50-216ENST00000484954 TALDO1P37837 337 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 NBL1P41271 181 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 MRPL19P49406 292 aaKnown RBP0.96□□□□□ -2.26
VPS50-216ENST00000484954 UBE2E1P51965 193 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 EIF3EP60228 445 aaKnown RBP0.96□□□□□ -2.26
VPS50-216ENST00000484954 BIKQ13323 160 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 TRAM2Q15035 370 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 NCF4Q15080 339 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 CARD17Q5XLA6 110 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 H3F3CQ6NXT2 135 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 NPSR1Q6W5P4 371 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 MBOAT2Q6ZWT7 520 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 MRPL55Q7Z7F7 128 aaKnown RBP0.96□□□□□ -2.26
VPS50-216ENST00000484954 PQLC3Q8N755 202 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 CHST4Q8NCG5 386 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 OR4C5Q8NGB2 326 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 OR56A4Q8NGH8 313 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 OR9G4Q8NGQ1 327 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 OR52E5Q8NH55 327 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 LYPD6BQ8NI32 183 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 CMTM2Q8TAZ6 248 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 APH1BQ8WW43 257 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 PRRC1Q96M27 445 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 XPO6Q96QU8 1125 aaKnown RBP0.96□□□□□ -2.26
VPS50-216ENST00000484954 C20orf24Q9BUV8 137 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 UCK2Q9BZX2 261 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 ACTR3CQ9C0K3 210 aaPredicted RBP0.96□□□□□ -2.26
VPS50-216ENST00000484954 TMEM27Q9HBJ8 222 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 ACP6Q9NPH0 428 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 CLN6Q9NWW5 311 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 PTTG3PQ9NZH4 202 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 SLC17A7Q9P2U7 560 aa0.96□□□□□ -2.26
VPS50-216ENST00000484954 UXTQ9UBK9 157 aaPredicted RBP0.96□□□□□ -2.26
VPS50-216ENST00000484954 COL22A1Q8NFW1 1626 aaPredicted RBP0.96□□□□□ -2.26
VPS50-216ENST00000484954 PCDH11XQ9BZA7 1347 aa0.95□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms