RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 KAAG1Q9UBP8 84 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 NOP16Q9Y3C1 178 aaKnown RBP10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 COMMD3-BMI1R4GMX3 469 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 CENPVL3A0A0U1RRI6 287 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 TVP23AA6NH52 213 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 ZNF879B4DU55 563 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 HOXA3O43365 443 aaPredicted RBP10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 NDUFA2O43678 99 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 ENSAO43768 121 aaKnown RBP10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 HLA-DQA2P01906 255 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 IRF2P14316 349 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 ZNF823P16415 610 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 MDKP21741 143 aaPredicted RBP10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 CFHR2P36980 270 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 SLC25A1P53007 311 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 MXRA7P84157 204 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 RELBQ01201 579 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 OR8G1Q15617 311 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 LINC01590Q5TEZ4 76 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 TEX36Q5VZQ5 186 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 PRSS45Q7RTY3 260 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 MRPL21Q7Z2W9 205 aaKnown RBP10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 LINC00471Q8N535 108 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 GCSAMQ8N6F7 178 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 SPERTQ8NA61 448 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 SLC37A3Q8NCC5 494 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 OR9Q2Q8NGE9 314 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 OR2T4Q8NH00 348 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 KCNJ15Q99712 375 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 SIRPDQ9H106 197 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 SMURF1Q9HCE7 757 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 NOX4Q9NPH5 578 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 ARL8BQ9NVJ2 186 aa10.15□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 TCRBV5S2A0A599 114 aa10.14□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 FAM181BA6NEQ2 426 aa10.14□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 P2RY10O00398 339 aa10.14□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 SFTPBP07988 381 aa10.14□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 KCNJ8Q15842 424 aa10.14□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 CD276Q5ZPR3 534 aa10.14□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 SFRP4Q6FHJ7 346 aaPredicted RBP10.14□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ZNF826PQ6ZT77 177 aa10.14□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 DCXRQ7Z4W1 244 aa10.14□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 FAM90A1Q86YD7 464 aa10.14□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 TMEM86BQ8N661 226 aa10.14□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ZNF511Q8NB15 262 aa10.14□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 PROKR2Q8NFJ6 384 aa10.14□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 OR51L1Q8NGJ5 315 aa10.14□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 OR4Q3Q8NH05 313 aa10.14□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 BCAS4Q8TDM0 211 aa10.14□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 NSL1Q96IY1 281 aa10.14□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 DGCR6LQ9BY27 220 aa10.14□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ACTR3BQ9P1U1 418 aa10.14□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ERVK-18Q9QC07 812 aa10.14□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 TRAV38-1A0A0B4J264 116 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 A0A1B0GUS0 222 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 OOEPA6NGQ2 149 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 GGT3PA6NGU5 568 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 TNFRSF11BO00300 401 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ZNF593O00488 134 aaPredicted RBP10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 NDUFA7O95182 113 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 MELTFP08582 738 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 SPI1P17947 270 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 CALB2P22676 271 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 FMO3P31513 532 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 DDOSTP39656 456 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ENTPD1P49961 510 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 FAM3AP98173 230 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 CRMP1Q14194 572 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 KLHL12Q53G59 568 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 GPR157Q5UAW9 335 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 TREML4Q6UXN2 200 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 CD300LDQ6UXZ3 194 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 RHOUQ7L0Q8 258 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 WDR86Q86TI4 376 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 DEFB107AQ8IZN7 70 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ARHGAP24Q8N264 748 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 OR52L1Q8NGH7 329 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 OR56B2PQ8NGI1 322 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 OR9Q1Q8NGQ5 310 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 SGK3Q96BR1 496 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 SLAMF6Q96DU3 332 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 DMRTB1Q96MA1 342 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 WDFY2Q96P53 400 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ADAT1Q9BUB4 502 aaKnown RBP10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 OPA3Q9H6K4 179 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 MARCH7Q9H992 704 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 TRIM36Q9NQ86 728 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 VNN3Q9NY84 501 aa10.13□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 DHRS12A0PJE2 317 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 C3orf80F5H4A9 247 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ADAM20O43506 726 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 XRCC2O43543 280 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 TOX4O94842 621 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 GYPBP06028 91 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 CLUP10909 449 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 SLC2A1P11166 492 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 ATP6V1B2P21281 511 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 OMGP23515 440 aa10.12□□□□□ -0.79
MSH5-SAPCD1-205ENST00000476085 PRKXP51817 358 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms