RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, human

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VARS-223	ENST00000474643	ACSM4	P0C7M7	580 aa		12.79	□□□□□ -0.36
VARS-223	ENST00000474643	ADRA2C	P18825	462 aa		12.79	□□□□□ -0.36
VARS-223	ENST00000474643	FPR2	P25090	351 aa		12.79	□□□□□ -0.36
VARS-223	ENST00000474643	EPHA2	P29317	976 aa		12.79	□□□□□ -0.36
VARS-223	ENST00000474643	NAA10	P41227	235 aa	Predicted RBP	12.79	□□□□□ -0.36
VARS-223	ENST00000474643	SLC15A1	P46059	708 aa		12.79	□□□□□ -0.36
VARS-223	ENST00000474643	PRKX	P51817	358 aa		12.79	□□□□□ -0.36
VARS-223	ENST00000474643	EFNB1	P98172	346 aa		12.79	□□□□□ -0.36
VARS-223	ENST00000474643	C12orf73	Q69YU5	71 aa		12.79	□□□□□ -0.36
VARS-223	ENST00000474643	RBMS3	Q6XE24	437 aa	Known RBP	12.79	□□□□□ -0.36
VARS-223	ENST00000474643	HIST2H2AB	Q8IUE6	130 aa	Predicted RBP	12.79	□□□□□ -0.36
VARS-223	ENST00000474643	OR5AS1	Q8N127	324 aa		12.79	□□□□□ -0.36
VARS-223	ENST00000474643	ZNF283	Q8N7M2	679 aa		12.79	□□□□□ -0.36
VARS-223	ENST00000474643	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	12.79	□□□□□ -0.36
VARS-223	ENST00000474643	ZNF555	Q8NEP9	628 aa		12.79	□□□□□ -0.36
VARS-223	ENST00000474643	ZNF799	Q96GE5	643 aa		12.79	□□□□□ -0.36
VARS-223	ENST00000474643	IL4I1	Q96RQ9	567 aa		12.79	□□□□□ -0.36
VARS-223	ENST00000474643	POFUT1	Q9H488	388 aa		12.79	□□□□□ -0.36
VARS-223	ENST00000474643	TOR3A	Q9H497	397 aa		12.79	□□□□□ -0.36
VARS-223	ENST00000474643	PNRC2	Q9NPJ4	139 aa	Known RBP	12.79	□□□□□ -0.36
VARS-223	ENST00000474643	FAM118A	Q9NWS6	357 aa		12.79	□□□□□ -0.36
VARS-223	ENST00000474643	HSPE1-MOB4	S4R3N1	261 aa		12.79	□□□□□ -0.36
VARS-223	ENST00000474643	LOC100130705	A0A1B0GUX0	176 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	MPZL2	O60487	215 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	VENTX	O95231	258 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	CD55	P08174	381 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	ADH4	P08319	380 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	H2BFM	P0C1H6	154 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	PSKH1	P11801	424 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	POLR2I	P36954	125 aa	Known RBP	12.78	□□□□□ -0.36
VARS-223	ENST00000474643	CDC42	P60953	191 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	GRB2	P62993	217 aa	Known RBP	12.78	□□□□□ -0.36
VARS-223	ENST00000474643	ZIK1	Q3SY52	487 aa	Predicted RBP	12.78	□□□□□ -0.36
VARS-223	ENST00000474643	ARMCX4	Q5H9R4	360 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	SLC25A30	Q5SVS4	291 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	C1QL2	Q7Z5L3	287 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	TIGD4	Q8IY51	512 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	GALNT4	Q8N4A0	578 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	DHRSX	Q8N5I4	330 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	OR10S1	Q8NGN2	331 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	TMEM163	Q8TC26	289 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	ZFAND2B	Q8WV99	257 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	GCDH	Q92947	438 aa	Predicted RBP	12.78	□□□□□ -0.36
VARS-223	ENST00000474643	OR2V2	Q96R30	315 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	KCNJ15	Q99712	375 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	ABHD6	Q9BV23	337 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	G6PC2	Q9NQR9	355 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	DDX28	Q9NUL7	540 aa	Known RBP	12.78	□□□□□ -0.36
VARS-223	ENST00000474643	TMEM106B	Q9NUM4	274 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	IMPAD1	Q9NX62	359 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	IL19	Q9UHD0	177 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	LAMP5	Q9UJQ1	280 aa		12.78	□□□□□ -0.36
VARS-223	ENST00000474643	TBX1	O43435	398 aa		12.77	□□□□□ -0.37
VARS-223	ENST00000474643	ANXA2	P07355	339 aa	Known RBP	12.77	□□□□□ -0.37
VARS-223	ENST00000474643	LYN	P07948	512 aa		12.77	□□□□□ -0.37
VARS-223	ENST00000474643	MRPL3	P09001	348 aa	Known RBP	12.77	□□□□□ -0.37
VARS-223	ENST00000474643	RAC2	P15153	192 aa		12.77	□□□□□ -0.37
VARS-223	ENST00000474643	KITLG	P21583	273 aa		12.77	□□□□□ -0.37
VARS-223	ENST00000474643	ADARB1	P78563	741 aa	Known RBP	12.77	□□□□□ -0.37
VARS-223	ENST00000474643	CDK5R2	Q13319	367 aa		12.77	□□□□□ -0.37
VARS-223	ENST00000474643	HLX	Q14774	488 aa	Predicted RBP	12.77	□□□□□ -0.37
VARS-223	ENST00000474643	PCK2	Q16822	640 aa		12.77	□□□□□ -0.37
VARS-223	ENST00000474643	DRAM2	Q6UX65	266 aa		12.77	□□□□□ -0.37
VARS-223	ENST00000474643	MEPCE	Q7L2J0	689 aa	Known RBP	12.77	□□□□□ -0.37
VARS-223	ENST00000474643	MRPL21	Q7Z2W9	205 aa	Known RBP	12.77	□□□□□ -0.37
VARS-223	ENST00000474643	NAA40	Q86UY6	237 aa		12.77	□□□□□ -0.37
VARS-223	ENST00000474643	ZNF454	Q8N9F8	522 aa		12.77	□□□□□ -0.37
VARS-223	ENST00000474643	OR8J1	Q8NGP2	316 aa		12.77	□□□□□ -0.37
VARS-223	ENST00000474643	FAM81A	Q8TBF8	368 aa		12.77	□□□□□ -0.37
VARS-223	ENST00000474643	ITLN1	Q8WWA0	313 aa		12.77	□□□□□ -0.37
VARS-223	ENST00000474643	TFAP2C	Q92754	450 aa		12.77	□□□□□ -0.37
VARS-223	ENST00000474643	HAVCR1	Q96D42	359 aa		12.77	□□□□□ -0.37
VARS-223	ENST00000474643	ZNF582	Q96NG8	517 aa	Predicted RBP	12.77	□□□□□ -0.37
VARS-223	ENST00000474643	MBOAT4	Q96T53	435 aa		12.77	□□□□□ -0.37
VARS-223	ENST00000474643	TEAD3	Q99594	435 aa		12.77	□□□□□ -0.37
VARS-223	ENST00000474643	C1QTNF5	Q9BXJ0	243 aa		12.77	□□□□□ -0.37
VARS-223	ENST00000474643	MARCH7	Q9H992	704 aa		12.77	□□□□□ -0.37
VARS-223	ENST00000474643	SLC22A31	A6NKX4	558 aa		12.76	□□□□□ -0.37
VARS-223	ENST00000474643	LRRC30	A6NM36	301 aa		12.76	□□□□□ -0.37
VARS-223	ENST00000474643	APOC1	P02654	83 aa		12.76	□□□□□ -0.37
VARS-223	ENST00000474643	SLC2A1	P11166	492 aa		12.76	□□□□□ -0.37
VARS-223	ENST00000474643	IRF2	P14316	349 aa		12.76	□□□□□ -0.37
VARS-223	ENST00000474643	SLC2A5	P22732	501 aa		12.76	□□□□□ -0.37
VARS-223	ENST00000474643	CX3CR1	P49238	355 aa		12.76	□□□□□ -0.37
VARS-223	ENST00000474643	SRP9	P49458	86 aa	Known RBP	12.76	□□□□□ -0.37
VARS-223	ENST00000474643	SNRPG	P62308	76 aa	Known RBP	12.76	□□□□□ -0.37
VARS-223	ENST00000474643	BTG1	P62324	171 aa		12.76	□□□□□ -0.37
VARS-223	ENST00000474643	RSPO1	Q2MKA7	263 aa	Predicted RBP	12.76	□□□□□ -0.37
VARS-223	ENST00000474643	ESCO2	Q56NI9	601 aa		12.76	□□□□□ -0.37
VARS-223	ENST00000474643	TMEM255A	Q5JRV8	349 aa		12.76	□□□□□ -0.37
VARS-223	ENST00000474643	NXNL2	Q5VZ03	156 aa		12.76	□□□□□ -0.37
VARS-223	ENST00000474643	OR2T2	Q6IF00	324 aa		12.76	□□□□□ -0.37
VARS-223	ENST00000474643	SLC16A9	Q7RTY1	509 aa		12.76	□□□□□ -0.37
VARS-223	ENST00000474643	BCDIN3D	Q7Z5W3	292 aa	Known RBP	12.76	□□□□□ -0.37
VARS-223	ENST00000474643	KRT77	Q7Z794	578 aa		12.76	□□□□□ -0.37
VARS-223	ENST00000474643	GID4	Q8IVV7	300 aa		12.76	□□□□□ -0.37
VARS-223	ENST00000474643	MUC20	Q8N307	709 aa	Predicted RBP	12.76	□□□□□ -0.37
VARS-223	ENST00000474643	C3orf56	Q8N813	242 aa		12.76	□□□□□ -0.37
VARS-223	ENST00000474643	BHLHE23	Q8NDY6	225 aa		12.76	□□□□□ -0.37
VARS-223	ENST00000474643	SETD9	Q8NE22	299 aa		12.76	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms