RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 HIKESHIQ53FT3 197 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 TTC19Q6DKK2 380 aaPredicted RBP1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 ZFP1Q6P2D0 407 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 WDR82Q6UXN9 313 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 SHISA6Q6ZSJ9 500 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 BHLHA15Q7RTS1 189 aaPredicted RBP1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 ZNF547Q8IVP9 402 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 CMTM8Q8IZV2 173 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 CSGALNACT2Q8N6G5 542 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 INO80EQ8NBZ0 244 aaPredicted RBP1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 OR10W1Q8NGF6 305 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 OR52P1PQ8NH57 321 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 OR10G6Q8NH81 332 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 LILRB4Q8NHJ6 448 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 LINC01560Q8TB33 94 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 ITFG1Q8TB96 612 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 ISG20Q96AZ6 181 aaKnown RBP1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 APH1AQ96BI3 265 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 HAUS1Q96CS2 278 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 L3HYPDHQ96EM0 354 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 SGTBQ96EQ0 304 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 OR10C1Q96KK4 312 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 RBBP8Q99708 897 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 RNF5Q99942 180 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 GGTLC1Q9BX51 225 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 NAA50Q9GZZ1 169 aaKnown RBP1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 ZNF442Q9H7R0 627 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 CD209Q9NNX6 404 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 PRSS16Q9NQE7 514 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 RRAGDQ9NQL2 400 aaPredicted RBP1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 ZC4H2Q9NQZ6 224 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 C8orf17Q9NRJ1 99 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 RGS18Q9NS28 235 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 MCUBQ9NWR8 336 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 GGA2Q9UJY4 613 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 DDX19BQ9UMR2 479 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 RHBDD3Q9Y3P4 386 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 COMMD3-BMI1R4GMX3 469 aa1.62□□□□□ -2.15
CCDC88A-212ENST00000474059 DHX57Q6P158 1386 aaKnown RBP1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 TSPOAP1O95153 1857 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 BRCA1P38398 1863 aaKnown RBP1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 KIF26AQ9ULI4 1882 aaPredicted RBP1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 IGKV1-27A0A075B6S5 117 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 C7orf66A4D0T2 115 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 NDUFC2-KCTD14E9PQ53 114 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 TNFRSF11BO00300 401 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 CHST10O43529 356 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 SLC16A7O60669 478 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 GLSO94925 669 aaPredicted RBP1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 HLA-DQB1P01920 261 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 GLAP06280 429 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 ZNF688P0C7X2 276 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 POLR2MP0CAP2 368 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 RAB5AP20339 215 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 CD70P32970 193 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 PPICP45877 212 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 ZNF33AQ06730 810 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 CDC20Q12834 499 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 SLC39A6Q13433 755 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 DOC2AQ14183 400 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 TFDP2Q14188 446 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 COX19Q49B96 90 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 RNASE13Q5GAN3 156 aaKnown RBP1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 RWDD4Q6NW29 188 aaKnown RBP1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 ZNF880Q6PDB4 577 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 UNC93AQ86WB7 457 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 MYOCDQ8IZQ8 938 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 TMEM256Q8N2U0 113 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 KIF2BQ8N4N8 673 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 NAT6Q93015 286 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 ZNF707Q96C28 371 aaPredicted RBP1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 LINC00477Q96M19 166 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 CSPG4P5Q96PW8 444 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 RNF157Q96PX1 679 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 GPR21Q99679 349 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 AGMATQ9BSE5 352 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 TIMM29Q9BSF4 260 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 TMEM243Q9BU79 118 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 DEFB129Q9H1M3 183 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 OR2AG1Q9H205 316 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 RPRD1BQ9NQG5 326 aaKnown RBP1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 PEF1Q9UBV8 284 aaKnown RBP1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 FBN1P35555 2871 aaKnown RBP1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 ADGRA3Q8IWK6 1321 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 BRWD3Q6RI45 1802 aa1.61□□□□□ -2.15
CCDC88A-212ENST00000474059 IGHV3-72A0A0B4J1Y9 119 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 MPDU1O75352 247 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 FARS2O95363 451 aaKnown RBP1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 IGLV3-25P01717 112 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 CD74P04233 296 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 IGKV4-1P06312 121 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 MYL9P24844 172 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 HTR1DP28221 377 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 GGT2P36268 569 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 PEX19P40855 299 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 OR1G1P47890 313 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 CCNG1P51959 295 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 AP1S2P56377 157 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 DAOAP59103 153 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 ATP6V0D1P61421 351 aa1.6□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms