RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 TCF21O43680 179 aa15.04■□□□□ -0
UPF3A-203ENST00000474056 FAM20BO75063 409 aa15.04■□□□□ -0
UPF3A-203ENST00000474056 LYNP07948 512 aa15.04■□□□□ -0
UPF3A-203ENST00000474056 ZNF121P58317 390 aaPredicted RBP15.04■□□□□ -0
UPF3A-203ENST00000474056 RPS7P62081 194 aaKnown RBP15.04■□□□□ -0
UPF3A-203ENST00000474056 HOXA4Q00056 320 aaPredicted RBP15.04■□□□□ -0
UPF3A-203ENST00000474056 MPPED2Q15777 294 aa15.04■□□□□ -0
UPF3A-203ENST00000474056 SNAPC1Q16533 368 aa15.04■□□□□ -0
UPF3A-203ENST00000474056 C1orf146Q5VVC0 180 aa15.04■□□□□ -0
UPF3A-203ENST00000474056 FAM57BQ71RH2 274 aa15.04■□□□□ -0
UPF3A-203ENST00000474056 C1orf87Q8N0U7 546 aa15.04■□□□□ -0
UPF3A-203ENST00000474056 Q8TCH9 128 aa15.04■□□□□ -0
UPF3A-203ENST00000474056 DNAJC9Q8WXX5 260 aa15.04■□□□□ -0
UPF3A-203ENST00000474056 SLC22A4Q9H015 551 aa15.04■□□□□ -0
UPF3A-203ENST00000474056 MMADHCQ9H3L0 296 aaPredicted RBP15.04■□□□□ -0
UPF3A-203ENST00000474056 OPA3Q9H6K4 179 aa15.04■□□□□ -0
UPF3A-203ENST00000474056 BRD7Q9NPI1 651 aa15.04■□□□□ -0
UPF3A-203ENST00000474056 MMP26Q9NRE1 261 aa15.04■□□□□ -0
UPF3A-203ENST00000474056 MRPL15Q9P015 296 aaKnown RBP15.04■□□□□ -0
UPF3A-203ENST00000474056 LRRC30A6NM36 301 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 A8MXK9 166 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 J3QLI3 93 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 MITFO75030 526 aaPredicted RBP15.03■□□□□ -0
UPF3A-203ENST00000474056 H2BFMP0C1H6 154 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 GATA3P23771 443 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 FAM3AP98173 230 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 APOFQ13790 326 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 ATP6AP1Q15904 470 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 TIGD6Q17RP2 521 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 SLC35D3Q5M8T2 416 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 RHOUQ7L0Q8 258 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 SLC16A9Q7RTY1 509 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 C1QL2Q7Z5L3 287 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 PARP8Q8N3A8 854 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 C19orf18Q8NEA5 215 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 THEM6Q8WUY1 208 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 ERGIC1Q969X5 290 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 TMEM246Q9BRR3 403 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 TEX12Q9BXU0 123 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 OCEL1Q9H607 264 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 C7orf69Q9H7B7 122 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 ZNF319Q9P2F9 582 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 OPN4Q9UHM6 478 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 KLHDC2Q9Y2U9 406 aa15.03■□□□□ -0
UPF3A-203ENST00000474056 POLR3KQ9Y2Y1 108 aaPredicted RBP15.03■□□□□ -0
UPF3A-203ENST00000474056 NOP16Q9Y3C1 178 aaKnown RBP15.03■□□□□ -0
UPF3A-203ENST00000474056 PPIAL4EA0A075B759 164 aa15.02■□□□□ -0
UPF3A-203ENST00000474056 PPIAL4CA0A0B4J2A2 164 aa15.02■□□□□ -0
UPF3A-203ENST00000474056 hCG_38984A0A1B0GV85 526 aa15.02■□□□□ -0
UPF3A-203ENST00000474056 PPIAL4DF5H284 164 aa15.02■□□□□ -0
UPF3A-203ENST00000474056 TRAPPC2LH3BP13 241 aa15.02■□□□□ -0
UPF3A-203ENST00000474056 GMDSO60547 372 aa15.02■□□□□ -0
UPF3A-203ENST00000474056 WNT2P09544 360 aa15.02■□□□□ -0
UPF3A-203ENST00000474056 PPIAL4FP0DN26 164 aa15.02■□□□□ -0
UPF3A-203ENST00000474056 RPS2P15880 293 aaKnown RBP15.02■□□□□ -0
UPF3A-203ENST00000474056 PTGES3Q15185 160 aaKnown RBP15.02■□□□□ -0
UPF3A-203ENST00000474056 ZNF404Q494X3 552 aa15.02■□□□□ -0
UPF3A-203ENST00000474056 ESCO2Q56NI9 601 aa15.02■□□□□ -0
UPF3A-203ENST00000474056 LIPNQ5VXI9 398 aa15.02■□□□□ -0
UPF3A-203ENST00000474056 AMIGO2Q86SJ2 522 aa15.02■□□□□ -0
UPF3A-203ENST00000474056 SGK3Q96BR1 496 aa15.02■□□□□ -0
UPF3A-203ENST00000474056 REEP6Q96HR9 211 aa15.02■□□□□ -0
UPF3A-203ENST00000474056 C19orf24Q9BVV8 132 aa15.02■□□□□ -0
UPF3A-203ENST00000474056 KRT84Q9NSB2 600 aa15.02■□□□□ -0
UPF3A-203ENST00000474056 PPIAL4AQ9Y536 164 aa15.02■□□□□ -0
UPF3A-203ENST00000474056 AP4S1Q9Y587 144 aa15.02■□□□□ -0
UPF3A-203ENST00000474056 STAB1Q9NY15 2570 aa15.02□□□□□ -0.01
UPF3A-203ENST00000474056 CCDC182A6NF36 153 aa15.01□□□□□ -0.01
UPF3A-203ENST00000474056 M0R129 80 aa15.01□□□□□ -0.01
UPF3A-203ENST00000474056 PTBP3O95758 552 aaKnown RBP15.01□□□□□ -0.01
UPF3A-203ENST00000474056 APOC1P02654 83 aa15.01□□□□□ -0.01
UPF3A-203ENST00000474056 IRF2P14316 349 aa15.01□□□□□ -0.01
UPF3A-203ENST00000474056 EPHA1P21709 976 aa15.01□□□□□ -0.01
UPF3A-203ENST00000474056 FASP25445 335 aa15.01□□□□□ -0.01
UPF3A-203ENST00000474056 HCCSP53701 268 aa15.01□□□□□ -0.01
UPF3A-203ENST00000474056 ESRRGP62508 458 aa15.01□□□□□ -0.01
UPF3A-203ENST00000474056 GFOD2Q3B7J2 385 aa15.01□□□□□ -0.01
UPF3A-203ENST00000474056 LRRN1Q6UXK5 716 aa15.01□□□□□ -0.01
UPF3A-203ENST00000474056 KLBQ86Z14 1044 aa15.01□□□□□ -0.01
UPF3A-203ENST00000474056 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.01□□□□□ -0.01
UPF3A-203ENST00000474056 ZNF454Q8N9F8 522 aa15.01□□□□□ -0.01
UPF3A-203ENST00000474056 DEFB108BQ8NET1 73 aa15.01□□□□□ -0.01
UPF3A-203ENST00000474056 OR11L1Q8NGX0 322 aa15.01□□□□□ -0.01
UPF3A-203ENST00000474056 LRTOMTQ8WZ04 291 aa15.01□□□□□ -0.01
UPF3A-203ENST00000474056 DUS3LQ96G46 650 aaKnown RBP15.01□□□□□ -0.01
UPF3A-203ENST00000474056 PGAM5Q96HS1 289 aa15.01□□□□□ -0.01
UPF3A-203ENST00000474056 GABARAPL1Q9H0R8 117 aa15.01□□□□□ -0.01
UPF3A-203ENST00000474056 SP140LQ9H930 580 aa15.01□□□□□ -0.01
UPF3A-203ENST00000474056 LRCH1Q9Y2L9 728 aa15.01□□□□□ -0.01
UPF3A-203ENST00000474056 G3V2T6 193 aa15□□□□□ -0.01
UPF3A-203ENST00000474056 PRKYO43930 277 aa15□□□□□ -0.01
UPF3A-203ENST00000474056 RGS9O75916 674 aaPredicted RBP15□□□□□ -0.01
UPF3A-203ENST00000474056 VENTXO95231 258 aa15□□□□□ -0.01
UPF3A-203ENST00000474056 FSTL3O95633 263 aa15□□□□□ -0.01
UPF3A-203ENST00000474056 MRPL3P09001 348 aaKnown RBP15□□□□□ -0.01
UPF3A-203ENST00000474056 ZNF12P17014 697 aa15□□□□□ -0.01
UPF3A-203ENST00000474056 EPHA2P29317 976 aa15□□□□□ -0.01
UPF3A-203ENST00000474056 DDOSTP39656 456 aa15□□□□□ -0.01
UPF3A-203ENST00000474056 KDM4DQ6B0I6 523 aa15□□□□□ -0.01
UPF3A-203ENST00000474056 BCDIN3DQ7Z5W3 292 aaKnown RBP15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms