RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 SMCO4Q9NRQ5 59 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 LPAR3Q9UBY5 353 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 EDARQ9UNE0 448 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 DHDHQ9UQ10 334 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 MRPS2Q9Y399 296 aaKnown RBP8.54□□□□□ -1.04
HDAC3-205ENST00000469550 POMT1Q9Y6A1 747 aa8.54□□□□□ -1.04
HDAC3-205ENST00000469550 A0A0B4J2A0 478 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 H0YGG7 62 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 UBE2CO00762 179 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 DUX1O43812 170 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 FBXO45P0C2W1 286 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 ZNF28P17035 718 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 RAB38P57729 211 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 TAS2R31P59538 309 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 ARF3P61204 181 aaPredicted RBP8.53□□□□□ -1.04
HDAC3-205ENST00000469550 EIF5AP63241 154 aaKnown RBP8.53□□□□□ -1.04
HDAC3-205ENST00000469550 HABP2Q14520 560 aaPredicted RBP8.53□□□□□ -1.04
HDAC3-205ENST00000469550 KCNAB1Q14722 419 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 GLYATL3Q5SZD4 288 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 DGAT2L6Q6ZPD8 337 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 OR10G6Q8NH81 332 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 SLC37A2Q8TED4 501 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 NUDCD2Q8WVJ2 157 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 ASB5Q8WWX0 329 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 SMIM8Q96KF7 97 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 TSPAN32Q96QS1 320 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 LMF1Q96S06 567 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 ZPBPQ9BS86 351 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 RNF126Q9BV68 326 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 ELOVL3Q9HB03 270 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 SEBOXQ9HB31 216 aaPredicted RBP8.53□□□□□ -1.04
HDAC3-205ENST00000469550 Q9N2J8 555 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 ASH2LQ9UBL3 628 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 SHPKQ9UHJ6 478 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 FARSAQ9Y285 508 aaKnown RBP8.53□□□□□ -1.04
HDAC3-205ENST00000469550 WIF1Q9Y5W5 379 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 B3GALT1Q9Y5Z6 326 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 UBR5O95071 2799 aaPredicted RBP8.53□□□□□ -1.04
HDAC3-205ENST00000469550 A6NCN8 305 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 METTL21EPA6NDL7 271 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 ZNF891A8MT65 544 aaPredicted RBP8.53□□□□□ -1.04
HDAC3-205ENST00000469550 LINC00587B1AMM8 73 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 OR10H2O60403 315 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 STK17BO94768 372 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 LIFP15018 202 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 MAOAP21397 527 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 PTAFRP25105 342 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 PMELP40967 661 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 RPL18Q07020 188 aaKnown RBP8.53□□□□□ -1.04
HDAC3-205ENST00000469550 MEP1BQ16820 701 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.53□□□□□ -1.04
HDAC3-205ENST00000469550 GFOD2Q3B7J2 385 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 ZNF260Q3ZCT1 412 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 CDNFQ49AH0 187 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 KLHL26Q53HC5 615 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 DCAF12Q5T6F0 453 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 EIF5AL1Q6IS14 154 aaKnown RBP8.53□□□□□ -1.04
HDAC3-205ENST00000469550 SLC18B1Q6NT16 456 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 PRSS41Q7RTY9 318 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 LYPD6Q86Y78 171 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 AVL9Q8NBF6 648 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 PLPP7Q8NBV4 271 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 OR5T3Q8NGG3 340 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 NANPQ8TBE9 248 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 ADAMTS17Q8TE56 1095 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 DCUN1D4Q92564 292 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 MOGAT1Q96PD6 335 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 AMELYQ99218 206 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 LPAR4Q99677 370 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 NUDT16L1Q9BRJ7 211 aaKnown RBP8.53□□□□□ -1.04
HDAC3-205ENST00000469550 NUDT9Q9BW91 350 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 SELENOIQ9C0D9 397 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 SEC61A2Q9H9S3 476 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 RHOFQ9HBH0 211 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 GSN-AS1Q9NRJ2 163 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 TBC1D29Q9UFV1 150 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 TMED7Q9Y3B3 224 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 TMEM184BQ9Y519 407 aaPredicted RBP8.53□□□□□ -1.04
HDAC3-205ENST00000469550 CSAG2Q9Y5P2 127 aa8.53□□□□□ -1.04
HDAC3-205ENST00000469550 MRPS18BQ9Y676 258 aaKnown RBP8.53□□□□□ -1.04
HDAC3-205ENST00000469550 TLN1Q9Y490 2541 aaKnown RBP8.53□□□□□ -1.04
HDAC3-205ENST00000469550 C1orf196B1AJZ1 125 aa8.52□□□□□ -1.05
HDAC3-205ENST00000469550 RNASEK-C17orf49H0YIS7 233 aa8.52□□□□□ -1.05
HDAC3-205ENST00000469550 SGCEO43556 437 aa8.52□□□□□ -1.05
HDAC3-205ENST00000469550 SCGNO76038 276 aa8.52□□□□□ -1.05
HDAC3-205ENST00000469550 CD5P06127 495 aa8.52□□□□□ -1.05
HDAC3-205ENST00000469550 ERCC1P07992 297 aaPredicted RBP8.52□□□□□ -1.05
HDAC3-205ENST00000469550 S100PP25815 95 aa8.52□□□□□ -1.05
HDAC3-205ENST00000469550 ABCD3P28288 659 aa8.52□□□□□ -1.05
HDAC3-205ENST00000469550 GSK3AP49840 483 aa8.52□□□□□ -1.05
HDAC3-205ENST00000469550 SNRPEP62304 92 aaKnown RBP8.52□□□□□ -1.05
HDAC3-205ENST00000469550 SKP1P63208 163 aa8.52□□□□□ -1.05
HDAC3-205ENST00000469550 HMGN3Q15651 99 aa8.52□□□□□ -1.05
HDAC3-205ENST00000469550 ODF4Q2M2E3 257 aa8.52□□□□□ -1.05
HDAC3-205ENST00000469550 KCTD18Q6PI47 426 aaPredicted RBP8.52□□□□□ -1.05
HDAC3-205ENST00000469550 CORO6Q6QEF8 472 aa8.52□□□□□ -1.05
HDAC3-205ENST00000469550 NPSR1Q6W5P4 371 aa8.52□□□□□ -1.05
HDAC3-205ENST00000469550 TMEM200AQ86VY9 491 aa8.52□□□□□ -1.05
HDAC3-205ENST00000469550 IL22RA1Q8N6P7 574 aa8.52□□□□□ -1.05
HDAC3-205ENST00000469550 C10orf53Q8N6V4 93 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms