RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 LIPCP11150 499 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 NAT2P11245 290 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 TBPP20226 339 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 STOMP27105 288 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 NTF4P34130 210 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 PRKXP51817 358 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 TAS2R19P59542 299 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 PLA2G7Q13093 441 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 TNK1Q13470 666 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 SLC10A1Q14973 349 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 ARL6IP1Q15041 203 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 RBMS2Q15434 407 aaKnown RBP6.68□□□□□ -1.34
COL6A3-208ENST00000468792 ZNF260Q3ZCT1 412 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 ZBTB37Q5TC79 503 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 SEZ6L2Q6UXD5 910 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 SLC16A14Q7RTX9 510 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 BIVMQ86UB2 503 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 GLCCI1Q86VQ1 547 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 IZUMO1Q8IYV9 350 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 OR5AS1Q8N127 324 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 PAQR4Q8N4S7 273 aaPredicted RBP6.68□□□□□ -1.34
COL6A3-208ENST00000468792 JAGN1Q8N5M9 183 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 TMEM251Q8N6I4 163 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 DTX3Q8N9I9 347 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 TMEM178AQ8NBL3 297 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 OR52N4Q8NGI2 321 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 OR4D6Q8NGJ1 314 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 OR1F12Q8NHA8 337 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 KCNG3Q8TAE7 436 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 ASB13Q8WXK3 278 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 FAM46BQ96A09 425 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 SEH1LQ96EE3 360 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 FBXO17Q96EF6 278 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 CPNE2Q96FN4 548 aaPredicted RBP6.68□□□□□ -1.34
COL6A3-208ENST00000468792 ZNF799Q96GE5 643 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 PGAM5Q96HS1 289 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 TECTBQ96PL2 329 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 FOXB1Q99853 325 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 SLC25A21Q9BQT8 299 aaPredicted RBP6.68□□□□□ -1.34
COL6A3-208ENST00000468792 CHST5Q9GZS9 411 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 C20orf85Q9H1P6 137 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 ATG5Q9H1Y0 275 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 MED28Q9H204 178 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 OR51J1Q9H342 316 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 EXO5Q9H790 373 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 CRLF2Q9HC73 371 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 GPR35Q9HC97 309 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 ASCL3Q9NQ33 180 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.68□□□□□ -1.34
COL6A3-208ENST00000468792 SLC2A8Q9NY64 477 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 PLEK2Q9NYT0 353 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 ZNF224Q9NZL3 707 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 ZNF319Q9P2F9 582 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 MCTS1Q9ULC4 181 aaKnown RBP6.68□□□□□ -1.34
COL6A3-208ENST00000468792 CNTRLQ7Z7A1 2325 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 MED12Q93074 2177 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 ZNF292O60281 2723 aa6.68□□□□□ -1.34
COL6A3-208ENST00000468792 LMX1BO60663 402 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 MRPL33O75394 65 aaKnown RBP6.67□□□□□ -1.34
COL6A3-208ENST00000468792 CA11O75493 328 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 FARS2O95363 451 aaKnown RBP6.67□□□□□ -1.34
COL6A3-208ENST00000468792 SYNGR4O95473 234 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 MT-ND4P03905 459 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 ITGB2P05107 769 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 GSTP1P09211 210 aaKnown RBP6.67□□□□□ -1.34
COL6A3-208ENST00000468792 MMP7P09237 267 aaPredicted RBP6.67□□□□□ -1.34
COL6A3-208ENST00000468792 SULT1A3P0DMM9 295 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 SULT1A4P0DMN0 295 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 VSIG8P0DPA2 414 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 RCVRNP35243 200 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 NBL1P41271 181 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 STARP49675 285 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 CCR6P51684 374 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 PMPCAQ10713 525 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 FAPQ12884 760 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 MEF2DQ14814 521 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 PPA1Q15181 289 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 PNLIPRP3Q17RR3 467 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 PCGF3Q3KNV8 242 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 TMEM42Q69YG0 159 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 GLDNQ6ZMI3 551 aaPredicted RBP6.67□□□□□ -1.34
COL6A3-208ENST00000468792 FAM57BQ71RH2 274 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 ANGPTL5Q86XS5 388 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 FAM89BQ8N5H3 189 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 SPICQ8N5J4 248 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 PNLDC1Q8NA58 520 aaKnown RBP6.67□□□□□ -1.34
COL6A3-208ENST00000468792 ROBO4Q8WZ75 1007 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 SPSB4Q96A44 273 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 SPSB1Q96BD6 273 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 RADILQ96JH8 1075 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 LYZL4Q96KX0 146 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 HYLS1Q96M11 299 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 C1orf147Q96MC9 270 aaPredicted RBP6.67□□□□□ -1.34
COL6A3-208ENST00000468792 SMAD5Q99717 465 aaKnown RBP6.67□□□□□ -1.34
COL6A3-208ENST00000468792 PRDM14Q9GZV8 571 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 RANBP3Q9H6Z4 567 aaPredicted RBP6.67□□□□□ -1.34
COL6A3-208ENST00000468792 ZDHHC11Q9H8X9 412 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 NOX3Q9HBY0 568 aa6.67□□□□□ -1.34
COL6A3-208ENST00000468792 RANGRFQ9HD47 186 aaPredicted RBP6.67□□□□□ -1.34
COL6A3-208ENST00000468792 UPB1Q9UBR1 384 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms