RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 CARD16Q5EG05 197 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 CST9Q5W186 159 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 SPNS3Q6ZMD2 512 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 TCF24Q7RTU0 167 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 HSD11B1LQ7Z5J1 315 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 SLC47A2Q86VL8 602 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 SMIM20Q8N5G0 67 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 EIF4E3Q8N5X7 224 aaKnown RBP4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 C4orf32Q8N8J7 132 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 OR1K1Q8NGR3 316 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 OR1P1Q8NH06 330 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 LNX1Q8TBB1 728 aaPredicted RBP4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 AENQ8WTP8 325 aaKnown RBP4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 TNFAIP8L1Q8WVP5 186 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 DLX4Q92988 240 aaPredicted RBP4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 UCN3Q969E3 161 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 ABTB1Q969K4 478 aaPredicted RBP4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 DNAJC19Q96DA6 116 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 DUX3Q96PT4 197 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 RBP7Q96R05 134 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 ARHGDIGQ99819 225 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 EBF4Q9BQW3 602 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 APOOQ9BUR5 198 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 OSBPL11Q9BXB4 747 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 PECRQ9BY49 303 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 CHIAQ9BZP6 476 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 GLIPR2Q9H4G4 154 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 SIAEQ9HAT2 523 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 SCRT2Q9NQ03 307 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 THAP10Q9P2Z0 257 aaPredicted RBP4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 IL36AQ9UHA7 158 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 PILRBQ9UKJ0 227 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 SLC35A3Q9Y2D2 325 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 WIPI2Q9Y4P8 454 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 CCDC144AA2RUR9 1427 aa4.03□□□□□ -1.76
CCDC88A-210ENST00000468534 NOTCH3Q9UM47 2321 aa4.03□□□□□ -1.77
CCDC88A-210ENST00000468534 MROH7Q68CQ1 1323 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 ZCWPW2A0A1B0GU75 182 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 LRIT2A6NDA9 550 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 TRABD2BA6NFA1 517 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 A8MVM7 634 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 TRDCB7Z8K6 153 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 ANKRD65E5RJM6 399 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 CRXO43186 299 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 PRKNO60260 465 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 CCDC22O60826 627 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 POP7O75817 140 aaKnown RBP4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 CNMDO75829 334 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 ANXA9O76027 345 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 PMS2P2O95744 297 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 IGSF6O95976 241 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 PAK4O96013 591 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 GP1BBP13224 206 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 FOLR1P15328 257 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 EDNRAP25101 427 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 GRPRP30550 384 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 IFNGR2P38484 337 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 PAFAH1B2P68402 229 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 SLC7A9P82251 487 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 RIPPLY1Q0D2K3 151 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 EDDM3AQ14507 147 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 GNMTQ14749 295 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 UBE2V2Q15819 145 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 GRK1Q15835 563 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 C3AR1Q16581 482 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 EIPR1Q53HC9 387 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 TMEM97Q5BJF2 176 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 DCAF12Q5T6F0 453 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 C1orf189Q5VU69 101 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 KRTAP5-1Q6L8H4 278 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 WDR74Q6RFH5 385 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 SMARCD3Q6STE5 483 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 TMEM205Q6UW68 189 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 GLT6D1Q7Z4J2 308 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 TMEM139Q8IV31 216 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 SLC34A3Q8N130 599 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 ARIH2OSQ8N7S6 290 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 C15orf54Q8N8G6 183 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 WDR31Q8NA23 367 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 DUSP18Q8NEJ0 188 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 OR4F17Q8NGA8 305 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 OR4F5Q8NH21 305 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 THAP6Q8TBB0 222 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 ZPLD1Q8TCW7 415 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 GATAD1Q8WUU5 269 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 EEF1AKMT1Q8WVE0 214 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 C1orf54Q8WWF1 131 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 RGP1Q92546 391 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 STMN2Q93045 179 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 TMEM203Q969S6 136 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 C14orf144Q96I85 54 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 ALKBH3Q96Q83 286 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 OR4F4Q96R69 305 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 CPXM1Q96SM3 734 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 CSF3RQ99062 836 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 NKX3-1Q99801 234 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 MED18Q9BUE0 208 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 ACTR6Q9GZN1 396 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 FKRPQ9H9S5 495 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 APOBEC3GQ9HC16 384 aaKnown RBP4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms