RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 DNAJB11Q9UBS4 358 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 ENTPD2Q9Y5L3 495 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 A0A0A6YYD5 115 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 EDDM13A0A1B0GTR0 161 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 SNRPCP09234 159 aaKnown RBP8.38□□□□□ -1.07
COL28A1-201ENST00000399429 ZNF728P0DKX0 622 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 ADH5P11766 374 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 ADRA2CP18825 462 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 KLK2P20151 261 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 SULT1A2P50226 295 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 DHCR24Q15392 516 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 NR0B2Q15466 257 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 WDR88Q6ZMY6 472 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 RRAGCQ9HB90 399 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 PADI1Q9ULC6 663 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 AHDC1Q5TGY3 1603 aaPredicted RBP8.38□□□□□ -1.07
COL28A1-201ENST00000399429 FTCDNL1E5RQL4 147 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 F5H5K5 113 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 G3V3Q6 166 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 GREM1O60565 184 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 CNOT4O95628 575 aaKnown RBP8.37□□□□□ -1.07
COL28A1-201ENST00000399429 CD8AP01732 235 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 PGA4P0DJD7 388 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 PGA5P0DJD9 388 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 CLRN1P58418 232 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 EFNB1P98172 346 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 MLC1Q15049 377 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 VAMP3Q15836 100 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 NKAIN1Q4KMZ8 207 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 LY6G6FQ5SQ64 297 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 DMRTA1Q5VZB9 504 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 ZNF880Q6PDB4 577 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 MCEMP1Q8IX19 187 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 ZNF485Q8NCK3 441 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 EMG1Q92979 244 aaKnown RBP8.37□□□□□ -1.07
COL28A1-201ENST00000399429 MMABQ96EY8 250 aaPredicted RBP8.37□□□□□ -1.07
COL28A1-201ENST00000399429 TCTN2Q96GX1 697 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 NOL4LQ96MY1 436 aaPredicted RBP8.37□□□□□ -1.07
COL28A1-201ENST00000399429 LPAR4Q99677 370 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 SMIM7Q9BQ49 75 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 OR10A2Q9H208 303 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 COA3Q9Y2R0 106 aaPredicted RBP8.37□□□□□ -1.07
COL28A1-201ENST00000399429 SERINC4A6NH21 518 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 TRAPPC6AO75865 159 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 HLA-HP01893 362 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 SERPINA7P05543 415 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 NOVA1P51513 510 aaKnown RBP8.37□□□□□ -1.07
COL28A1-201ENST00000399429 SLC37A1P57057 533 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 RPL18Q07020 188 aaKnown RBP8.37□□□□□ -1.07
COL28A1-201ENST00000399429 ELAVL3Q14576 367 aaKnown RBP8.37□□□□□ -1.07
COL28A1-201ENST00000399429 FCRL6Q6DN72 434 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 APOBEC4Q8WW27 367 aaKnown RBP8.37□□□□□ -1.07
COL28A1-201ENST00000399429 MS4A10Q96PG2 267 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 FAM117AQ9C073 453 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 RNF208Q9H0X6 261 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 UCK1Q9HA47 277 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 PITPNC1Q9UKF7 332 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 CDC14CA4D256 554 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 TRGC1P0CF51 173 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 ZBTB25P24278 435 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 OPRM1P35372 400 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 CD200P41217 278 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 PPICP45877 212 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 ERVS71-1P61550 626 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 HTR3DQ70Z44 454 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 ZPLD1Q8TCW7 415 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 OPN3Q9H1Y3 402 aaPredicted RBP8.37□□□□□ -1.07
COL28A1-201ENST00000399429 SLC39A9Q9NUM3 307 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 C19orf53Q9UNZ5 99 aaPredicted RBP8.37□□□□□ -1.07
COL28A1-201ENST00000399429 LOC102724200A0A096LPH7 203 aaPredicted RBP8.37□□□□□ -1.07
COL28A1-201ENST00000399429 PMS2P1A4D2B8 440 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 TMEM150CB9EJG8 249 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 HLA-DRB3P79483 266 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 DUSP2Q05923 314 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 EGR3Q06889 387 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 FUT5Q11128 374 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 OR10AD1Q8NGE0 317 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 ADAMTS17Q8TE56 1095 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 EXTL1Q92935 676 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 FAM103A1Q9BTL3 118 aaKnown RBP8.37□□□□□ -1.07
COL28A1-201ENST00000399429 PLK3Q9H4B4 646 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 SLC17A5Q9NRA2 495 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 CACFD1Q9UGQ2 172 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 APOBEC3BQ9UH17 382 aaKnown RBP8.37□□□□□ -1.07
COL28A1-201ENST00000399429 KCNE5Q9UJ90 142 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 KLK13Q9UKR3 277 aa8.37□□□□□ -1.07
COL28A1-201ENST00000399429 A0A0B4J2E0 115 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 A0A1B0GX12 115 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 OR4C45A6NMZ5 311 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 H0YL77 283 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 TLX3O43711 291 aaPredicted RBP8.36□□□□□ -1.07
COL28A1-201ENST00000399429 SOD2P04179 222 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 NKX2-1P43699 371 aaPredicted RBP8.36□□□□□ -1.07
COL28A1-201ENST00000399429 ELLP55199 621 aaPredicted RBP8.36□□□□□ -1.07
COL28A1-201ENST00000399429 CD81P60033 236 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 ARL6IP1Q15041 203 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 NCR3LG1Q68D85 454 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 MRGPREQ86SM8 312 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 VN1R2Q8NFZ6 395 aa8.36□□□□□ -1.07
COL28A1-201ENST00000399429 OR4C5Q8NGB2 326 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms