RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 DSCR9P59020 149 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 ZNF92Q03936 586 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 YIF1BQ5BJH7 314 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 C9orf135Q5VTT2 229 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 OR51L1Q8NGJ5 315 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 OR10Z1Q8NGY1 313 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 SLC25A40Q8TBP6 338 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 SMAP2Q8WU79 429 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-202ENST00000394943 DMRTB1Q96MA1 342 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 RHNO1Q9BSD3 238 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 COPS4Q9BT78 406 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 FGF23Q9GZV9 251 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-202ENST00000394943 DLL4Q9NR61 685 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 SCN3BQ9NY72 215 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 EDARQ9UNE0 448 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 F5H0A9 414 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-202ENST00000394943 LALBAP00709 142 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 F12P00748 615 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-202ENST00000394943 KRT8P05787 483 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 SOD3P08294 240 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 ALDH3B2P48448 385 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 HCCSP53701 268 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 TMEM244Q5VVB8 128 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 SPNS3Q6ZMD2 512 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 TMPRSS11AQ6ZMR5 421 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 SAXO1Q8IYX7 474 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 SYNPRQ8TBG9 265 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 OPALINQ96PE5 141 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 ISG20L2Q9H9L3 353 aaKnown RBP5.97□□□□□ -1.45
LIMA1-202ENST00000394943 NDUFB11Q9NX14 153 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 CISD1Q9NZ45 108 aaKnown RBP5.97□□□□□ -1.45
LIMA1-202ENST00000394943 FOXJ3Q9UPW0 622 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 DAPL1A0PJW8 107 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 PQLC2LA1A4F0 135 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 NDUFS8O00217 210 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 RGS10O43665 173 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 NAA10P41227 235 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-202ENST00000394943 GSK3AP49840 483 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 CHN2P52757 468 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 RIN1Q13671 783 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 ZMAT1Q5H9K5 638 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 ZNF787Q6DD87 383 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 LRRN1Q6UXK5 716 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 NAA40Q86UY6 237 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 C11orf53Q8IXP5 236 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 CLEC4MQ9H2X3 399 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-202ENST00000394943 BARX1Q9HBU1 254 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-202ENST00000394943 ACOXLQ9NUZ1 547 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 MYEF2Q9P2K5 600 aaKnown RBP5.97□□□□□ -1.45
LIMA1-202ENST00000394943 AASSQ9UDR5 926 aa5.97□□□□□ -1.45
LIMA1-202ENST00000394943 SIRT4Q9Y6E7 314 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-202ENST00000394943 C17orf100A8MU93 164 aa5.96□□□□□ -1.45
LIMA1-202ENST00000394943 OR4A8P0C604 315 aa5.96□□□□□ -1.45
LIMA1-202ENST00000394943 FGF9P31371 208 aaPredicted RBP5.96□□□□□ -1.45
LIMA1-202ENST00000394943 KLF3P57682 345 aaPredicted RBP5.96□□□□□ -1.45
LIMA1-202ENST00000394943 OR12D2P58182 307 aa5.96□□□□□ -1.45
LIMA1-202ENST00000394943 PIGFQ07326 219 aa5.96□□□□□ -1.45
LIMA1-202ENST00000394943 SNTB2Q13425 540 aaKnown RBP5.96□□□□□ -1.45
LIMA1-202ENST00000394943 TEX36Q5VZQ5 186 aa5.96□□□□□ -1.45
LIMA1-202ENST00000394943 KRT77Q7Z794 578 aa5.96□□□□□ -1.45
LIMA1-202ENST00000394943 FAM90A1Q86YD7 464 aa5.96□□□□□ -1.45
LIMA1-202ENST00000394943 SPRYD4Q8WW59 207 aaPredicted RBP5.96□□□□□ -1.45
LIMA1-202ENST00000394943 PP6455Q8WZ26 134 aa5.96□□□□□ -1.45
LIMA1-202ENST00000394943 OR5P3Q8WZ94 311 aa5.96□□□□□ -1.45
LIMA1-202ENST00000394943 HTRA1Q92743 480 aa5.96□□□□□ -1.45
LIMA1-202ENST00000394943 C4orf36Q96KX1 117 aa5.96□□□□□ -1.45
LIMA1-202ENST00000394943 BCL7BQ9BQE9 202 aa5.96□□□□□ -1.45
LIMA1-202ENST00000394943 CHST5Q9GZS9 411 aa5.96□□□□□ -1.45
LIMA1-202ENST00000394943 IL36GQ9NZH8 169 aa5.96□□□□□ -1.45
LIMA1-202ENST00000394943 FBLN5Q9UBX5 448 aa5.96□□□□□ -1.45
LIMA1-202ENST00000394943 A0A1W2PR80 420 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 MLNRO43193 412 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 XPNPEP2O43895 674 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 TNFAIP8O95379 198 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 TGFBR2P37173 567 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 GP2P55259 537 aaKnown RBP5.96□□□□□ -1.46
LIMA1-202ENST00000394943 EMX1Q04741 257 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-202ENST00000394943 FAM166AQ6J272 317 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 MUC15Q8N387 334 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 SVOPQ8N4V2 548 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 OR1J1Q8NGS3 322 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 NEUROG1Q92886 237 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 YIPF6Q96EC8 236 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 REEP6Q96HR9 211 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 FOXN4Q96NZ1 517 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 IFT22Q9H7X7 185 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 ZNF275Q9NSD4 429 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-202ENST00000394943 ERVK-18Q9QC07 812 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 CLEC2DQ9UHP7 191 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 E9PI62 339 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 HAX1O00165 279 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 GATBO75879 557 aaKnown RBP5.96□□□□□ -1.46
LIMA1-202ENST00000394943 ACKR3P25106 362 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 KRTAP10-9P60411 292 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 ERVK11-1P61568 191 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 GALK2Q01415 458 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 DYNC1I2Q13409 638 aaKnown RBP5.96□□□□□ -1.46
LIMA1-202ENST00000394943 DEFB113Q30KQ7 82 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 FBXL14Q8N1E6 418 aa5.96□□□□□ -1.46
LIMA1-202ENST00000394943 ITPKCQ96DU7 683 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms