RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 M0R233 179 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 SULT1C2O00338 296 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 P2RY10O00398 339 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 DOK2O60496 412 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 RGS11O94810 467 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 CFPP27918 469 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 TAS2R19P59542 299 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 ZP1P60852 638 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 SQSTM1Q13501 440 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 ZNF626Q68DY1 528 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 STEAP1BQ6NZ63 245 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 C11orf88Q6PI97 169 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 CCDC107Q8WV48 283 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 MARS2Q96GW9 593 aaKnown RBP8.59□□□□□ -1.03
COL6A3-204ENST00000392003 C1orf198Q9H425 327 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 MYOTQ9UBF9 498 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 NPTNQ9Y639 398 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 PCNX3Q9H6A9 2034 aa8.59□□□□□ -1.03
COL6A3-204ENST00000392003 SHISA8B8ZZ34 492 aa8.59□□□□□ -1.04
COL6A3-204ENST00000392003 PYCARD-AS1I3L0S3 204 aa8.59□□□□□ -1.04
COL6A3-204ENST00000392003 L7N2F9 121 aa8.59□□□□□ -1.04
COL6A3-204ENST00000392003 TP53I11O14683 189 aa8.59□□□□□ -1.04
COL6A3-204ENST00000392003 ZNF354AO60765 605 aaPredicted RBP8.59□□□□□ -1.04
COL6A3-204ENST00000392003 OR2J2O76002 312 aa8.59□□□□□ -1.04
COL6A3-204ENST00000392003 POU3F2P20265 443 aaPredicted RBP8.59□□□□□ -1.04
COL6A3-204ENST00000392003 LGALSLQ3ZCW2 172 aaPredicted RBP8.59□□□□□ -1.04
COL6A3-204ENST00000392003 SAPCD1Q5SSQ6 148 aa8.59□□□□□ -1.04
COL6A3-204ENST00000392003 RAB11FIP2Q7L804 512 aa8.59□□□□□ -1.04
COL6A3-204ENST00000392003 C11orf40Q8WZ69 217 aa8.59□□□□□ -1.04
COL6A3-204ENST00000392003 SORCS2Q96PQ0 1159 aa8.59□□□□□ -1.04
COL6A3-204ENST00000392003 OR5B2Q96R09 309 aa8.59□□□□□ -1.04
COL6A3-204ENST00000392003 UTP23Q9BRU9 249 aaKnown RBP8.59□□□□□ -1.04
COL6A3-204ENST00000392003 SLCO5A1Q9H2Y9 848 aa8.59□□□□□ -1.04
COL6A3-204ENST00000392003 KCNK15Q9H427 330 aa8.59□□□□□ -1.04
COL6A3-204ENST00000392003 NPDC1Q9NQX5 325 aaPredicted RBP8.59□□□□□ -1.04
COL6A3-204ENST00000392003 DMRT1Q9Y5R6 373 aa8.59□□□□□ -1.04
COL6A3-204ENST00000392003 WIF1Q9Y5W5 379 aa8.59□□□□□ -1.04
COL6A3-204ENST00000392003 FREM3P0C091 2139 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 AHCTF1Q8WYP5 2266 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 A0A0A6YYH2 397 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 A6NJ64 397 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 TMEM200CA6NKL6 621 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 SYT7O43581 403 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 CYB5AP00167 134 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 IGHG1P01857 330 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 IFNA4P05014 189 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 ISG15P05161 165 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 HSD11B1P28845 292 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 MYBPHQ13203 477 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 TMEM205Q6UW68 189 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 OR51S1Q8NGJ8 323 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 SLAMF6Q96DU3 332 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 TMEM185BQ9H7F4 350 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 PPIEQ9UNP9 301 aaKnown RBP8.58□□□□□ -1.04
COL6A3-204ENST00000392003 PTRH2Q9Y3E5 179 aaKnown RBP8.58□□□□□ -1.04
COL6A3-204ENST00000392003 ZNF726A6NNF4 738 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 TLX3O43711 291 aaPredicted RBP8.58□□□□□ -1.04
COL6A3-204ENST00000392003 WNT11O96014 354 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 GUCA1AP43080 201 aaPredicted RBP8.58□□□□□ -1.04
COL6A3-204ENST00000392003 TMEM95Q3KNT9 176 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 Q5PR19 223 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 DNM1P46Q6ZS02 220 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 COMMD2Q86X83 199 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 ZNF383Q8NA42 475 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 OR10G3Q8NGC4 313 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 OR6N1Q8NGY5 312 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 ST7LQ8TDW4 575 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 RNF133Q8WVZ7 376 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 NKD1Q969G9 470 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 MESP1Q9BRJ9 268 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 NDRG3Q9UGV2 375 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 GLS2Q9UI32 602 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 GPR160Q9UJ42 338 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 MAB21L2Q9Y586 359 aa8.58□□□□□ -1.04
COL6A3-204ENST00000392003 URB1O60287 2271 aaKnown RBP8.57□□□□□ -1.04
COL6A3-204ENST00000392003 OPN1LWP04000 364 aa8.57□□□□□ -1.04
COL6A3-204ENST00000392003 CD3DP04234 171 aa8.57□□□□□ -1.04
COL6A3-204ENST00000392003 ZNF20P17024 532 aa8.57□□□□□ -1.04
COL6A3-204ENST00000392003 CSRP1P21291 193 aaKnown RBP8.57□□□□□ -1.04
COL6A3-204ENST00000392003 BDKRB2P30411 391 aa8.57□□□□□ -1.04
COL6A3-204ENST00000392003 TRA2AQ13595 282 aaKnown RBP eCLIP8.57□□□□□ -1.04
COL6A3-204ENST00000392003 RAB12Q6IQ22 244 aa8.57□□□□□ -1.04
COL6A3-204ENST00000392003 GABRG1Q8N1C3 465 aa8.57□□□□□ -1.04
COL6A3-204ENST00000392003 FGGYQ96C11 551 aa8.57□□□□□ -1.04
COL6A3-204ENST00000392003 NKX3-1Q99801 234 aaPredicted RBP8.57□□□□□ -1.04
COL6A3-204ENST00000392003 MRPL37Q9BZE1 423 aaKnown RBP8.57□□□□□ -1.04
COL6A3-204ENST00000392003 CHTOPQ9Y3Y2 248 aaKnown RBP8.57□□□□□ -1.04
COL6A3-204ENST00000392003 IGFBP3P17936 291 aaPredicted RBP8.57□□□□□ -1.04
COL6A3-204ENST00000392003 MMP16P51512 607 aa8.57□□□□□ -1.04
COL6A3-204ENST00000392003 GMFBP60983 142 aa8.57□□□□□ -1.04
COL6A3-204ENST00000392003 PLPPR5Q32ZL2 321 aa8.57□□□□□ -1.04
COL6A3-204ENST00000392003 FAM166AQ6J272 317 aa8.57□□□□□ -1.04
COL6A3-204ENST00000392003 CHST4Q8NCG5 386 aa8.57□□□□□ -1.04
COL6A3-204ENST00000392003 CCDC54Q8NEL0 328 aa8.57□□□□□ -1.04
COL6A3-204ENST00000392003 OR51A2Q8NGJ7 313 aa8.57□□□□□ -1.04
COL6A3-204ENST00000392003 GPX8Q8TED1 209 aa8.57□□□□□ -1.04
COL6A3-204ENST00000392003 SLC25A43Q8WUT9 341 aaPredicted RBP8.57□□□□□ -1.04
COL6A3-204ENST00000392003 DVL3Q92997 716 aaPredicted RBP8.57□□□□□ -1.04
COL6A3-204ENST00000392003 WNT2BQ93097 391 aa8.57□□□□□ -1.04
COL6A3-204ENST00000392003 FAM46BQ96A09 425 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms