RNA–Protein interactions for RNA: ENST00000340074.9

UBE3B-201, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,448 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-201ENST00000340074 USF1P22415 310 aaPredicted RBP12.93□□□□□ -0.34
UBE3B-201ENST00000340074 RIDAP52758 137 aaKnown RBP12.93□□□□□ -0.34
UBE3B-201ENST00000340074 LOXL1Q08397 574 aaPredicted RBP12.93□□□□□ -0.34
UBE3B-201ENST00000340074 GFOD2Q3B7J2 385 aa12.93□□□□□ -0.34
UBE3B-201ENST00000340074 CLEC9AQ6UXN8 241 aa12.93□□□□□ -0.34
UBE3B-201ENST00000340074 OR10H4Q8NGA5 316 aa12.93□□□□□ -0.34
UBE3B-201ENST00000340074 OR8B12Q8NGG6 310 aa12.93□□□□□ -0.34
UBE3B-201ENST00000340074 OR2T27Q8NH04 317 aa12.93□□□□□ -0.34
UBE3B-201ENST00000340074 RHOXF1Q8NHV9 184 aa12.93□□□□□ -0.34
UBE3B-201ENST00000340074 RNFT2Q96EX2 444 aa12.93□□□□□ -0.34
UBE3B-201ENST00000340074 OR2V2Q96R30 315 aa12.93□□□□□ -0.34
UBE3B-201ENST00000340074 OPA3Q9H6K4 179 aa12.93□□□□□ -0.34
UBE3B-201ENST00000340074 IL19Q9UHD0 177 aa12.93□□□□□ -0.34
UBE3B-201ENST00000340074 ABCA2Q9BZC7 2435 aa12.92□□□□□ -0.34
UBE3B-201ENST00000340074 IGHV4-61A0A0C4DH41 118 aa12.92□□□□□ -0.34
UBE3B-201ENST00000340074 TMEM269A0A1B0GVZ9 245 aa12.92□□□□□ -0.34
UBE3B-201ENST00000340074 A0A1B0GWJ7 208 aa12.92□□□□□ -0.34
UBE3B-201ENST00000340074 PPIHO43447 177 aaKnown RBP12.92□□□□□ -0.34
UBE3B-201ENST00000340074 CLIC3O95833 236 aa12.92□□□□□ -0.34
UBE3B-201ENST00000340074 DCTDP32321 178 aa12.92□□□□□ -0.34
UBE3B-201ENST00000340074 TMEM33P57088 247 aa12.92□□□□□ -0.34
UBE3B-201ENST00000340074 FAM3AP98173 230 aa12.92□□□□□ -0.34
UBE3B-201ENST00000340074 EGR3Q06889 387 aa12.92□□□□□ -0.34
UBE3B-201ENST00000340074 HNRNPA0Q13151 305 aaKnown RBP12.92□□□□□ -0.34
UBE3B-201ENST00000340074 HFEQ30201 348 aa12.92□□□□□ -0.34
UBE3B-201ENST00000340074 Q71RC1 249 aaPredicted RBP12.92□□□□□ -0.34
UBE3B-201ENST00000340074 OR56B2PQ8NGI1 322 aa12.92□□□□□ -0.34
UBE3B-201ENST00000340074 ITLN1Q8WWA0 313 aa12.92□□□□□ -0.34
UBE3B-201ENST00000340074 CYGBQ8WWM9 190 aa12.92□□□□□ -0.34
UBE3B-201ENST00000340074 CCL17Q92583 94 aa12.92□□□□□ -0.34
UBE3B-201ENST00000340074 FAM206AQ9NX38 181 aa12.92□□□□□ -0.34
UBE3B-201ENST00000340074 MRM2Q9UI43 246 aaKnown RBP12.92□□□□□ -0.34
UBE3B-201ENST00000340074 MALRD1Q5VYJ5 2156 aa12.92□□□□□ -0.34
UBE3B-201ENST00000340074 MTORP42345 2549 aa12.91□□□□□ -0.34
UBE3B-201ENST00000340074 hCG_38984A0A1B0GV85 526 aa12.91□□□□□ -0.34
UBE3B-201ENST00000340074 SNTNA6NMZ2 147 aa12.91□□□□□ -0.34
UBE3B-201ENST00000340074 F5H5P2 479 aa12.91□□□□□ -0.34
UBE3B-201ENST00000340074 CA6P23280 308 aa12.91□□□□□ -0.34
UBE3B-201ENST00000340074 RBMXP38159 391 aaKnown RBP12.91□□□□□ -0.34
UBE3B-201ENST00000340074 GPR6P46095 362 aaPredicted RBP12.91□□□□□ -0.34
UBE3B-201ENST00000340074 IL5RAQ01344 420 aa12.91□□□□□ -0.34
UBE3B-201ENST00000340074 SLC34A1Q06495 639 aa12.91□□□□□ -0.34
UBE3B-201ENST00000340074 MFGE8Q08431 387 aaPredicted RBP12.91□□□□□ -0.34
UBE3B-201ENST00000340074 ZNF691Q5VV52 312 aa12.91□□□□□ -0.34
UBE3B-201ENST00000340074 PLEKHG7Q6ZR37 379 aa12.91□□□□□ -0.34
UBE3B-201ENST00000340074 DHRSXQ8N5I4 330 aa12.91□□□□□ -0.34
UBE3B-201ENST00000340074 APH1BQ8WW43 257 aa12.91□□□□□ -0.34
UBE3B-201ENST00000340074 Q96MT0 163 aa12.91□□□□□ -0.34
UBE3B-201ENST00000340074 RGCCQ9H4X1 137 aa12.91□□□□□ -0.34
UBE3B-201ENST00000340074 MRPL15Q9P015 296 aaKnown RBP12.91□□□□□ -0.34
UBE3B-201ENST00000340074 LRP5LA4QPB2 252 aa12.9□□□□□ -0.34
UBE3B-201ENST00000340074 ACOD1A6NK06 481 aa12.9□□□□□ -0.34
UBE3B-201ENST00000340074 H0YHG0 523 aa12.9□□□□□ -0.34
UBE3B-201ENST00000340074 J3QRE1 110 aa12.9□□□□□ -0.34
UBE3B-201ENST00000340074 SRSF10O75494 262 aaKnown RBP12.9□□□□□ -0.34
UBE3B-201ENST00000340074 PNPP00491 289 aa12.9□□□□□ -0.34
UBE3B-201ENST00000340074 TACSTD2P09758 323 aa12.9□□□□□ -0.34
UBE3B-201ENST00000340074 DBTP11182 482 aaKnown RBP12.9□□□□□ -0.34
UBE3B-201ENST00000340074 TNFRSF1AP19438 455 aa12.9□□□□□ -0.34
UBE3B-201ENST00000340074 CFL1P23528 166 aaKnown RBP12.9□□□□□ -0.34
UBE3B-201ENST00000340074 GSK3AP49840 483 aa12.9□□□□□ -0.34
UBE3B-201ENST00000340074 ZNF85Q03923 595 aa12.9□□□□□ -0.34
UBE3B-201ENST00000340074 ZNF91Q05481 1191 aa12.9□□□□□ -0.34
UBE3B-201ENST00000340074 KRTAP1-1Q07627 177 aa12.9□□□□□ -0.34
UBE3B-201ENST00000340074 TMEM249Q2WGJ8 235 aa12.9□□□□□ -0.34
UBE3B-201ENST00000340074 ZNF829Q3KNS6 432 aaPredicted RBP12.9□□□□□ -0.34
UBE3B-201ENST00000340074 TTC23Q5W5X9 447 aa12.9□□□□□ -0.34
UBE3B-201ENST00000340074 YIPF7Q8N8F6 280 aa12.9□□□□□ -0.34
UBE3B-201ENST00000340074 PPP1R14AQ96A00 147 aa12.9□□□□□ -0.34
UBE3B-201ENST00000340074 MEGF10Q96KG7 1140 aa12.9□□□□□ -0.34
UBE3B-201ENST00000340074 LYZL4Q96KX0 146 aa12.9□□□□□ -0.34
UBE3B-201ENST00000340074 PBOV1Q9GZY1 135 aa12.9□□□□□ -0.34
UBE3B-201ENST00000340074 RNPEPL1Q9HAU8 725 aa12.9□□□□□ -0.34
UBE3B-201ENST00000340074 AMBNQ9NP70 447 aa12.9□□□□□ -0.34
UBE3B-201ENST00000340074 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.89□□□□□ -0.35
UBE3B-201ENST00000340074 IGHV3-64DA0A0J9YX35 117 aa12.89□□□□□ -0.35
UBE3B-201ENST00000340074 CLDN25C9JDP6 229 aa12.89□□□□□ -0.35
UBE3B-201ENST00000340074 LOC110117498-PIK3R3F6TDL0 507 aa12.89□□□□□ -0.35
UBE3B-201ENST00000340074 WNT9BO14905 357 aa12.89□□□□□ -0.35
UBE3B-201ENST00000340074 WBP4O75554 376 aaKnown RBP12.89□□□□□ -0.35
UBE3B-201ENST00000340074 KRT8P05787 483 aa12.89□□□□□ -0.35
UBE3B-201ENST00000340074 HEXAP06865 529 aa12.89□□□□□ -0.35
UBE3B-201ENST00000340074 DDOSTP39656 456 aa12.89□□□□□ -0.35
UBE3B-201ENST00000340074 SRP9P49458 86 aaKnown RBP12.89□□□□□ -0.35
UBE3B-201ENST00000340074 MMP16P51512 607 aa12.89□□□□□ -0.35
UBE3B-201ENST00000340074 CHN2P52757 468 aa12.89□□□□□ -0.35
UBE3B-201ENST00000340074 ADARB1P78563 741 aaKnown RBP12.89□□□□□ -0.35
UBE3B-201ENST00000340074 MVKQ03426 396 aa12.89□□□□□ -0.35
UBE3B-201ENST00000340074 OR8G1Q15617 311 aa12.89□□□□□ -0.35
UBE3B-201ENST00000340074 ZNF684Q5T5D7 378 aa12.89□□□□□ -0.35
UBE3B-201ENST00000340074 AVPI1Q5T686 147 aa12.89□□□□□ -0.35
UBE3B-201ENST00000340074 NRG4Q8WWG1 115 aa12.89□□□□□ -0.35
UBE3B-201ENST00000340074 DVL3Q92997 716 aaPredicted RBP12.89□□□□□ -0.35
UBE3B-201ENST00000340074 LGALS12Q96DT0 336 aa12.89□□□□□ -0.35
UBE3B-201ENST00000340074 SIGLEC11Q96RL6 698 aa12.89□□□□□ -0.35
UBE3B-201ENST00000340074 SOX7Q9BT81 388 aa12.89□□□□□ -0.35
UBE3B-201ENST00000340074 ADAT1Q9BUB4 502 aaKnown RBP12.89□□□□□ -0.35
UBE3B-201ENST00000340074 ADI1Q9BV57 179 aa12.89□□□□□ -0.35
UBE3B-201ENST00000340074 SLC22A4Q9H015 551 aa12.89□□□□□ -0.35
UBE3B-201ENST00000340074 NARFLQ9H6Q4 476 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms