RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 MTRF1O75570 445 aaKnown RBP11.67□□□□□ -0.54
HMGB1-202ENST00000339872 CTAG2O75638 210 aa11.67□□□□□ -0.54
HMGB1-202ENST00000339872 FAHP16930 419 aa11.67□□□□□ -0.54
HMGB1-202ENST00000339872 MPGP29372 298 aa11.67□□□□□ -0.54
HMGB1-202ENST00000339872 PTH2RP49190 550 aa11.67□□□□□ -0.54
HMGB1-202ENST00000339872 TAS2R20P59543 309 aa11.67□□□□□ -0.54
HMGB1-202ENST00000339872 MZT2BQ6NZ67 158 aa11.67□□□□□ -0.54
HMGB1-202ENST00000339872 KRT74Q7RTS7 529 aa11.67□□□□□ -0.54
HMGB1-202ENST00000339872 OR5AS1Q8N127 324 aa11.67□□□□□ -0.54
HMGB1-202ENST00000339872 ENKURQ8TC29 256 aa11.67□□□□□ -0.54
HMGB1-202ENST00000339872 SMIM4Q8WVI0 70 aa11.67□□□□□ -0.54
HMGB1-202ENST00000339872 REEP6Q96HR9 211 aa11.67□□□□□ -0.54
HMGB1-202ENST00000339872 SPACA5Q96QH8 159 aa11.67□□□□□ -0.54
HMGB1-202ENST00000339872 MYEF2Q9P2K5 600 aaKnown RBP11.67□□□□□ -0.54
HMGB1-202ENST00000339872 PIGLQ9Y2B2 252 aa11.67□□□□□ -0.54
HMGB1-202ENST00000339872 RHBDD3Q9Y3P4 386 aa11.67□□□□□ -0.54
HMGB1-202ENST00000339872 APC2O95996 2303 aa11.67□□□□□ -0.54
HMGB1-202ENST00000339872 DLL1O00548 723 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 IL18BPO95998 194 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 HCKP08631 526 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 THBS4P35443 961 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 ZNF93P35789 620 aaPredicted RBP11.66□□□□□ -0.54
HMGB1-202ENST00000339872 ANKRD16Q6P6B7 361 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 ABHD17AQ96GS6 310 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 NOX3Q9HBY0 568 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 DOCK7Q96N67 2140 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 PTHLHP12272 177 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 SRP9P49458 86 aaKnown RBP11.66□□□□□ -0.54
HMGB1-202ENST00000339872 PLEKHN1Q494U1 663 aaPredicted RBP11.66□□□□□ -0.54
HMGB1-202ENST00000339872 ACSF3Q4G176 576 aaPredicted RBP11.66□□□□□ -0.54
HMGB1-202ENST00000339872 HIKESHIQ53FT3 197 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 DMRTC1Q5HYR2 192 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 ZNF585AQ6P3V2 769 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 FAM214BQ7L5A3 538 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 FGD2Q7Z6J4 655 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 BIVMQ86UB2 503 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 CADM3Q8N126 398 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 CNEP1R1Q8N9A8 125 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 C9orf106Q8NAJ2 232 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 OR1K1Q8NGR3 316 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 PHF21AQ96BD5 680 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 GAL3ST1Q99999 423 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 UQCC2Q9BRT2 126 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 ATG5Q9H1Y0 275 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 MMP28Q9H239 520 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 RBFOX1Q9NWB1 397 aaKnown RBP11.66□□□□□ -0.54
HMGB1-202ENST00000339872 ATPIF1Q9UII2 106 aa11.66□□□□□ -0.54
HMGB1-202ENST00000339872 OR14I1A6ND48 311 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 XRCC3O43542 346 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 GSTZ1O43708 216 aaPredicted RBP11.65□□□□□ -0.54
HMGB1-202ENST00000339872 KDM4BO94953 1096 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 CCNOP22674 350 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 PRSS12P56730 875 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 RAB1AP62820 205 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 OR10K2Q6IF99 312 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 TFAP2EQ6VUC0 442 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 Q6ZSR3 168 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 RNF144BQ7Z419 303 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 TOMM5Q8N4H5 51 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 CCDC54Q8NEL0 328 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 NPRL2Q8WTW4 380 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 WNT2BQ93097 391 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 DIABLOQ9NR28 239 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 TP53TG5Q9Y2B4 290 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 MGAQ8IWI9 3026 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 LOC100509620A0A075B734 347 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 IGKV1-9A0A0C4DH69 117 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 GGT3PA6NGU5 568 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 GABARAPH6UMI1 98 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 K7ENP7 123 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 RRP8O43159 456 aaKnown RBP11.65□□□□□ -0.54
HMGB1-202ENST00000339872 ARR3P36575 388 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 KIR2DL3P43628 341 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 CAPZA1P52907 286 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 GUSBP1Q15486 140 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 HACD4Q5VWC8 232 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 AWAT2Q6E213 333 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 RPUSD3Q6P087 351 aaKnown RBP11.65□□□□□ -0.54
HMGB1-202ENST00000339872 TMEM53Q6P2H8 277 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 INO80CQ6PI98 192 aaPredicted RBP11.65□□□□□ -0.54
HMGB1-202ENST00000339872 SEMA6DQ8NFY4 1073 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 OR52I2Q8NH67 350 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 PP6455Q8WZ26 134 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 CHST5Q9GZS9 411 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 B3GNT2Q9NY97 397 aa11.65□□□□□ -0.54
HMGB1-202ENST00000339872 FAM240BA0A1B0GVZ2 78 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 AHRRA9YTQ3 701 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 LDLRAD4O15165 306 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 CRYABP02511 175 aaKnown RBP11.64□□□□□ -0.55
HMGB1-202ENST00000339872 CCL2P13500 99 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 GABRA1P14867 456 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 ACKR3P25106 362 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 MNDAP41218 407 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 GPR176Q14439 515 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 GLCCI1Q86VQ1 547 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 C15orf40Q8WUR7 153 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 FCAMRQ8WWV6 532 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 EXTL1Q92935 676 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 C10orf35Q96D05 121 aa11.64□□□□□ -0.55
HMGB1-202ENST00000339872 GPER1Q99527 375 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms