RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 YTHDF1Q9BYJ9 559 aaKnown RBP13.39□□□□□ -0.27
CLN3-201ENST00000333496 IL19Q9UHD0 177 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 KLHDC2Q9Y2U9 406 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 ORC6Q9Y5N6 252 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 CEPT1Q9Y6K0 416 aa13.39□□□□□ -0.27
CLN3-201ENST00000333496 ARHGAP32A7KAX9 2087 aa13.38□□□□□ -0.27
CLN3-201ENST00000333496 LOC100289279A0A1B0GTE1 492 aa13.38□□□□□ -0.27
CLN3-201ENST00000333496 H0YAE9 185 aa13.38□□□□□ -0.27
CLN3-201ENST00000333496 ZNF701M0R085 212 aaPredicted RBP13.38□□□□□ -0.27
CLN3-201ENST00000333496 OPRL1P41146 370 aa13.38□□□□□ -0.27
CLN3-201ENST00000333496 SLC15A1P46059 708 aa13.38□□□□□ -0.27
CLN3-201ENST00000333496 HCCSP53701 268 aa13.38□□□□□ -0.27
CLN3-201ENST00000333496 RAD23AP54725 363 aa13.38□□□□□ -0.27
CLN3-201ENST00000333496 LMO4P61968 165 aa13.38□□□□□ -0.27
CLN3-201ENST00000333496 RPS7P62081 194 aaKnown RBP13.38□□□□□ -0.27
CLN3-201ENST00000333496 MVKQ03426 396 aa13.38□□□□□ -0.27
CLN3-201ENST00000333496 MALLQ13021 153 aa13.38□□□□□ -0.27
CLN3-201ENST00000333496 ZIK1Q3SY52 487 aaPredicted RBP13.38□□□□□ -0.27
CLN3-201ENST00000333496 GLYATL3Q5SZD4 288 aa13.38□□□□□ -0.27
CLN3-201ENST00000333496 PGAP1Q75T13 922 aa13.38□□□□□ -0.27
CLN3-201ENST00000333496 PRSS45Q7RTY3 260 aa13.38□□□□□ -0.27
CLN3-201ENST00000333496 ZNF283Q8N7M2 679 aa13.38□□□□□ -0.27
CLN3-201ENST00000333496 TCEANCQ8N8B7 351 aa13.38□□□□□ -0.27
CLN3-201ENST00000333496 OR10AD1Q8NGE0 317 aa13.38□□□□□ -0.27
CLN3-201ENST00000333496 OR13G1Q8NGZ3 307 aa13.38□□□□□ -0.27
CLN3-201ENST00000333496 CYGBQ8WWM9 190 aa13.38□□□□□ -0.27
CLN3-201ENST00000333496 OR2V2Q96R30 315 aa13.38□□□□□ -0.27
CLN3-201ENST00000333496 TOR3AQ9H497 397 aa13.38□□□□□ -0.27
CLN3-201ENST00000333496 WIPI2Q9Y4P8 454 aa13.38□□□□□ -0.27
CLN3-201ENST00000333496 CLDN25C9JDP6 229 aa13.37□□□□□ -0.27
CLN3-201ENST00000333496 LMX1BO60663 402 aa13.37□□□□□ -0.27
CLN3-201ENST00000333496 TGFAP01135 160 aa13.37□□□□□ -0.27
CLN3-201ENST00000333496 TNFSF4P23510 183 aa13.37□□□□□ -0.27
CLN3-201ENST00000333496 CX3CR1P49238 355 aa13.37□□□□□ -0.27
CLN3-201ENST00000333496 ADARB1P78563 741 aaKnown RBP13.37□□□□□ -0.27
CLN3-201ENST00000333496 THEM6Q8WUY1 208 aa13.37□□□□□ -0.27
CLN3-201ENST00000333496 MBOAT4Q96T53 435 aa13.37□□□□□ -0.27
CLN3-201ENST00000333496 GABARAPL3Q9BY60 117 aa13.37□□□□□ -0.27
CLN3-201ENST00000333496 N6AMT1Q9Y5N5 214 aa13.37□□□□□ -0.27
CLN3-201ENST00000333496 FAM157AC9JC47 383 aa13.36□□□□□ -0.27
CLN3-201ENST00000333496 HLA-DPB1P04440 258 aa13.36□□□□□ -0.27
CLN3-201ENST00000333496 SELEP16581 610 aa13.36□□□□□ -0.27
CLN3-201ENST00000333496 TNFRSF1AP19438 455 aa13.36□□□□□ -0.27
CLN3-201ENST00000333496 ALOX5APP20292 161 aa13.36□□□□□ -0.27
CLN3-201ENST00000333496 HSD11B1P28845 292 aa13.36□□□□□ -0.27
CLN3-201ENST00000333496 CDH15P55291 814 aa13.36□□□□□ -0.27
CLN3-201ENST00000333496 AADACL4Q5VUY2 407 aa13.36□□□□□ -0.27
CLN3-201ENST00000333496 FAM166AQ6J272 317 aa13.36□□□□□ -0.27
CLN3-201ENST00000333496 SLC16A9Q7RTY1 509 aa13.36□□□□□ -0.27
CLN3-201ENST00000333496 MRPL21Q7Z2W9 205 aaKnown RBP13.36□□□□□ -0.27
CLN3-201ENST00000333496 PRIMA1Q86XR5 153 aa13.36□□□□□ -0.27
CLN3-201ENST00000333496 ZNF454Q8N9F8 522 aa13.36□□□□□ -0.27
CLN3-201ENST00000333496 TMEM163Q8TC26 289 aa13.36□□□□□ -0.27
CLN3-201ENST00000333496 SPSB4Q96A44 273 aa13.36□□□□□ -0.27
CLN3-201ENST00000333496 GCM1Q9NP62 436 aa13.36□□□□□ -0.27
CLN3-201ENST00000333496 TMEM100Q9NV29 134 aa13.36□□□□□ -0.27
CLN3-201ENST00000333496 TMEM160Q9NX00 188 aa13.36□□□□□ -0.27
CLN3-201ENST00000333496 DNAJC27Q9NZQ0 273 aa13.36□□□□□ -0.27
CLN3-201ENST00000333496 ZNF319Q9P2F9 582 aa13.36□□□□□ -0.27
CLN3-201ENST00000333496 ENOPH1Q9UHY7 261 aa13.36□□□□□ -0.27
CLN3-201ENST00000333496 DOCK11Q5JSL3 2073 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 CD300LBA8K4G0 201 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 F5H5P2 479 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 MRPL3P09001 348 aaKnown RBP13.35□□□□□ -0.27
CLN3-201ENST00000333496 ZNF121P58317 390 aaPredicted RBP13.35□□□□□ -0.27
CLN3-201ENST00000333496 KRTAP21-3Q3LHN1 58 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 NXNL2Q5VZ03 156 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 GPR141Q7Z602 305 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 LINC01356Q8N9X3 169 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 MEGF10Q96KG7 1140 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 SIGLEC11Q96RL6 698 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 IL4I1Q96RQ9 567 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 PRRG3Q9BZD7 231 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 TMEM106BQ9NUM4 274 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 FAM118AQ9NWS6 357 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 ANXA2P07355 339 aaKnown RBP13.35□□□□□ -0.27
CLN3-201ENST00000333496 GNAO1P09471 354 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 H2BFMP0C1H6 154 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 MAB21L1Q13394 359 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 TTC23Q5W5X9 447 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 LRRN1Q6UXK5 716 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 MEPCEQ7L2J0 689 aaKnown RBP13.35□□□□□ -0.27
CLN3-201ENST00000333496 ZNF555Q8NEP9 628 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 ZNF420Q8TAQ5 688 aaPredicted RBP13.35□□□□□ -0.27
CLN3-201ENST00000333496 SPRYD4Q8WW59 207 aaPredicted RBP13.35□□□□□ -0.27
CLN3-201ENST00000333496 RAB1CQ92928 201 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 SGK3Q96BR1 496 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 RIBC2Q9H4K1 309 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 LAMP5Q9UJQ1 280 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 KCNS2Q9ULS6 477 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 COPS3Q9UNS2 423 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 PPP1R3CQ9UQK1 317 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 NPTNQ9Y639 398 aa13.35□□□□□ -0.27
CLN3-201ENST00000333496 IGHV3-64DA0A0J9YX35 117 aa13.34□□□□□ -0.27
CLN3-201ENST00000333496 PRR32B1ATL7 298 aa13.34□□□□□ -0.27
CLN3-201ENST00000333496 TBX1O43435 398 aa13.34□□□□□ -0.27
CLN3-201ENST00000333496 XRCC2O43543 280 aa13.34□□□□□ -0.27
CLN3-201ENST00000333496 SLC3A1Q07837 685 aa13.34□□□□□ -0.27
CLN3-201ENST00000333496 LCN1P1Q5VSP4 162 aa13.34□□□□□ -0.27
CLN3-201ENST00000333496 FAM57BQ71RH2 274 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms